miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18355 5' -52.6 NC_004681.1 + 10401 0.66 0.896977
Target:  5'- cGCUgucCAAGGCUGaCCAGgccauucuggaccgcUACGUCAUc -3'
miRNA:   3'- -UGGau-GUUCCGACaGGUC---------------AUGCAGUA- -5'
18355 5' -52.6 NC_004681.1 + 70492 0.66 0.886029
Target:  5'- aGCCgUAUggucacuGAGGUUGUCCAGUGacacuccguagcCGUCAUu -3'
miRNA:   3'- -UGG-AUG-------UUCCGACAGGUCAU------------GCAGUA- -5'
18355 5' -52.6 NC_004681.1 + 74284 0.66 0.863184
Target:  5'- uGCCUcACgGAGGCUGUCCAcGUA-GUCc- -3'
miRNA:   3'- -UGGA-UG-UUCCGACAGGU-CAUgCAGua -5'
18355 5' -52.6 NC_004681.1 + 47091 0.67 0.854816
Target:  5'- gGCCUGCAacAGGaaUGUCCGGUAgGcCAc -3'
miRNA:   3'- -UGGAUGU--UCCg-ACAGGUCAUgCaGUa -5'
18355 5' -52.6 NC_004681.1 + 70115 0.67 0.854816
Target:  5'- gGCCaUGCGuuccucauuGGCUGgCCuGUACGUCAUu -3'
miRNA:   3'- -UGG-AUGUu--------CCGACaGGuCAUGCAGUA- -5'
18355 5' -52.6 NC_004681.1 + 44885 0.67 0.837371
Target:  5'- cACCUcCAGGGCgGUCCAG-AgGUCc- -3'
miRNA:   3'- -UGGAuGUUCCGaCAGGUCaUgCAGua -5'
18355 5' -52.6 NC_004681.1 + 4762 0.67 0.828312
Target:  5'- cGCCUGCGAGGCUcGUgUGGcUGCGUaCGa -3'
miRNA:   3'- -UGGAUGUUCCGA-CAgGUC-AUGCA-GUa -5'
18355 5' -52.6 NC_004681.1 + 30129 0.67 0.819041
Target:  5'- gAUCUACAAGGCgg-CCuGUGgGUCGg -3'
miRNA:   3'- -UGGAUGUUCCGacaGGuCAUgCAGUa -5'
18355 5' -52.6 NC_004681.1 + 53872 0.69 0.749119
Target:  5'- gGCCUACAucauggGGGCUGUCUggccaucgcAGUA-GUCGUa -3'
miRNA:   3'- -UGGAUGU------UCCGACAGG---------UCAUgCAGUA- -5'
18355 5' -52.6 NC_004681.1 + 44847 0.7 0.695287
Target:  5'- cGCCcGCGAGGgaGUCCucgACGUCGa -3'
miRNA:   3'- -UGGaUGUUCCgaCAGGucaUGCAGUa -5'
18355 5' -52.6 NC_004681.1 + 73605 0.7 0.684285
Target:  5'- gACgCUGCAAGGaCUGUCC-GUGCGaCAc -3'
miRNA:   3'- -UG-GAUGUUCC-GACAGGuCAUGCaGUa -5'
18355 5' -52.6 NC_004681.1 + 3645 0.71 0.63988
Target:  5'- uGCCUGCGAGGa-GUUCGGUguuguGCGUCGg -3'
miRNA:   3'- -UGGAUGUUCCgaCAGGUCA-----UGCAGUa -5'
18355 5' -52.6 NC_004681.1 + 74422 0.71 0.617591
Target:  5'- cACCUucCGGGGCgGUCCAGccACGUCGc -3'
miRNA:   3'- -UGGAu-GUUCCGaCAGGUCa-UGCAGUa -5'
18355 5' -52.6 NC_004681.1 + 72442 1.05 0.004105
Target:  5'- gACCUACAAGGCUGUCCAGUACGUCAUu -3'
miRNA:   3'- -UGGAUGUUCCGACAGGUCAUGCAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.