miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18356 3' -56.6 NC_004681.1 + 56014 0.66 0.714683
Target:  5'- --gGC-GGGcACGCGCACGaccuGCGCg -3'
miRNA:   3'- aaaUGaCCCaUGCGCGUGCcu--CGCGa -5'
18356 3' -56.6 NC_004681.1 + 39953 0.66 0.701982
Target:  5'- --cGCUGcucgaacuugGCGCGCGCGG-GCGCg -3'
miRNA:   3'- aaaUGACcca-------UGCGCGUGCCuCGCGa -5'
18356 3' -56.6 NC_004681.1 + 2446 0.66 0.693461
Target:  5'- ---cCUGGGccuugUugGCGCGCGGcacgcagaagugGGCGCc -3'
miRNA:   3'- aaauGACCC-----AugCGCGUGCC------------UCGCGa -5'
18356 3' -56.6 NC_004681.1 + 57509 0.66 0.682759
Target:  5'- -----aGGGUgACGCcagcauCGCGGAGCGCg -3'
miRNA:   3'- aaaugaCCCA-UGCGc-----GUGCCUCGCGa -5'
18356 3' -56.6 NC_004681.1 + 70892 0.66 0.668777
Target:  5'- --cGCUGaGGcUAUGCGaCucaacggagcugagGCGGAGCGCUa -3'
miRNA:   3'- aaaUGAC-CC-AUGCGC-G--------------UGCCUCGCGA- -5'
18356 3' -56.6 NC_004681.1 + 51523 0.66 0.661224
Target:  5'- -aUGgUGGcGUACGUcguggcguugaGCGCGGAGgGCa -3'
miRNA:   3'- aaAUgACC-CAUGCG-----------CGUGCCUCgCGa -5'
18356 3' -56.6 NC_004681.1 + 17569 0.67 0.650412
Target:  5'- --aACUGGGgcagugACGC-CGCGGccaAGCGCc -3'
miRNA:   3'- aaaUGACCCa-----UGCGcGUGCC---UCGCGa -5'
18356 3' -56.6 NC_004681.1 + 39997 0.67 0.628749
Target:  5'- --gGCUGGccGCGCGCugGGGGUcuccGCc -3'
miRNA:   3'- aaaUGACCcaUGCGCGugCCUCG----CGa -5'
18356 3' -56.6 NC_004681.1 + 33777 0.68 0.553479
Target:  5'- -gUACaUGcGGUcACGCGCGCGGAGguuCGCc -3'
miRNA:   3'- aaAUG-AC-CCA-UGCGCGUGCCUC---GCGa -5'
18356 3' -56.6 NC_004681.1 + 22946 0.71 0.413643
Target:  5'- --aACUGGGUugGaaCcCGGAGCGCa -3'
miRNA:   3'- aaaUGACCCAugCgcGuGCCUCGCGa -5'
18356 3' -56.6 NC_004681.1 + 47537 0.71 0.386565
Target:  5'- --gGCUGGGUGCGCuGCcCGGAuUGCg -3'
miRNA:   3'- aaaUGACCCAUGCG-CGuGCCUcGCGa -5'
18356 3' -56.6 NC_004681.1 + 25493 0.71 0.386565
Target:  5'- --gACUGGGUugGuCGCucaGCGGGGaCGCc -3'
miRNA:   3'- aaaUGACCCAugC-GCG---UGCCUC-GCGa -5'
18356 3' -56.6 NC_004681.1 + 69879 0.71 0.377803
Target:  5'- ----aUGGGUACGUGCGCGcGGcCGCUg -3'
miRNA:   3'- aaaugACCCAUGCGCGUGCcUC-GCGA- -5'
18356 3' -56.6 NC_004681.1 + 58884 0.72 0.369174
Target:  5'- ---cCUGGGcGCGCGCcucgACGGuGCGCg -3'
miRNA:   3'- aaauGACCCaUGCGCG----UGCCuCGCGa -5'
18356 3' -56.6 NC_004681.1 + 74147 1.05 0.001812
Target:  5'- aUUUACUGGGUACGCGCACGGAGCGCUc -3'
miRNA:   3'- -AAAUGACCCAUGCGCGUGCCUCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.