miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18356 5' -57.2 NC_004681.1 + 24895 0.66 0.687102
Target:  5'- cCCAuGCGGGCaugggaauuucCGUG-GCGCcaGCGAGCGc -3'
miRNA:   3'- -GGU-CGCCCG-----------GUACuCGUGa-CGUUCGU- -5'
18356 5' -57.2 NC_004681.1 + 23637 0.66 0.683906
Target:  5'- aCGGUGGuGCCggGGGCAaucacgaugacgucCUGCGGGUu -3'
miRNA:   3'- gGUCGCC-CGGuaCUCGU--------------GACGUUCGu -5'
18356 5' -57.2 NC_004681.1 + 44680 0.66 0.676432
Target:  5'- gCGGC-GGCCGcGAGCGCgGC-GGCGa -3'
miRNA:   3'- gGUCGcCCGGUaCUCGUGaCGuUCGU- -5'
18356 5' -57.2 NC_004681.1 + 41664 0.66 0.676432
Target:  5'- gCCuGCGGG--GUG-GCGCUGCAuGGCGg -3'
miRNA:   3'- -GGuCGCCCggUACuCGUGACGU-UCGU- -5'
18356 5' -57.2 NC_004681.1 + 36825 0.66 0.676432
Target:  5'- gCC-GCGGGCCGUG---GCUGCuucGCAg -3'
miRNA:   3'- -GGuCGCCCGGUACucgUGACGuu-CGU- -5'
18356 5' -57.2 NC_004681.1 + 60001 0.66 0.665721
Target:  5'- gCCuGCGGGUCcucaagcccgGUGGGCACcUGCucGCc -3'
miRNA:   3'- -GGuCGCCCGG----------UACUCGUG-ACGuuCGu -5'
18356 5' -57.2 NC_004681.1 + 25941 0.66 0.65928
Target:  5'- uCCAGCGagauGagcccguccuggauuGCCAUGAGCACcGCGguGGCGg -3'
miRNA:   3'- -GGUCGC----C---------------CGGUACUCGUGaCGU--UCGU- -5'
18356 5' -57.2 NC_004681.1 + 49547 0.66 0.65498
Target:  5'- gUAGCggGGGCCGUGgaAGCACUGgCcgguGCAg -3'
miRNA:   3'- gGUCG--CCCGGUAC--UCGUGAC-Guu--CGU- -5'
18356 5' -57.2 NC_004681.1 + 60101 0.66 0.633448
Target:  5'- cCCAcCGGGCU-UGAGgACccGCAGGCAu -3'
miRNA:   3'- -GGUcGCCCGGuACUCgUGa-CGUUCGU- -5'
18356 5' -57.2 NC_004681.1 + 41559 0.67 0.601164
Target:  5'- --cGCGGccGCCAUGcAGCGCcaccccGCAGGCAg -3'
miRNA:   3'- gguCGCC--CGGUAC-UCGUGa-----CGUUCGU- -5'
18356 5' -57.2 NC_004681.1 + 42165 0.67 0.596871
Target:  5'- uCUGGCGuaGGCCAgguuggcugacugGAGCGCUGCAcugcucagguuGGCGc -3'
miRNA:   3'- -GGUCGC--CCGGUa------------CUCGUGACGU-----------UCGU- -5'
18356 5' -57.2 NC_004681.1 + 5330 0.67 0.590441
Target:  5'- aCAGCGGGCgCGUaguaguagGAGUcCUGCAucuguGGCGa -3'
miRNA:   3'- gGUCGCCCG-GUA--------CUCGuGACGU-----UCGU- -5'
18356 5' -57.2 NC_004681.1 + 59786 0.67 0.579753
Target:  5'- cCCAGCagGGGgCGUGgcGGCGCUGCcauguuGGCu -3'
miRNA:   3'- -GGUCG--CCCgGUAC--UCGUGACGu-----UCGu -5'
18356 5' -57.2 NC_004681.1 + 41238 0.68 0.569105
Target:  5'- cUCAGUGGGUCGacaaUGAcGCAguggUGCAAGCAc -3'
miRNA:   3'- -GGUCGCCCGGU----ACU-CGUg---ACGUUCGU- -5'
18356 5' -57.2 NC_004681.1 + 13081 0.68 0.569105
Target:  5'- gCCAGCGGuguaGCCgGUGAGCGCacGUcAGCGc -3'
miRNA:   3'- -GGUCGCC----CGG-UACUCGUGa-CGuUCGU- -5'
18356 5' -57.2 NC_004681.1 + 36373 0.68 0.558507
Target:  5'- aCGGCGGGUgGgUGGcGCACUGCGAa-- -3'
miRNA:   3'- gGUCGCCCGgU-ACU-CGUGACGUUcgu -5'
18356 5' -57.2 NC_004681.1 + 66176 0.68 0.547966
Target:  5'- aCCAccGCGGG-CAUGuaccagauguGGCGCUGCAAGg- -3'
miRNA:   3'- -GGU--CGCCCgGUAC----------UCGUGACGUUCgu -5'
18356 5' -57.2 NC_004681.1 + 57718 0.68 0.52708
Target:  5'- -aAGUGGGUCAaccaGAGCACcGCAgaGGCAg -3'
miRNA:   3'- ggUCGCCCGGUa---CUCGUGaCGU--UCGU- -5'
18356 5' -57.2 NC_004681.1 + 46323 0.68 0.52708
Target:  5'- --cGUGGGCCA--GGCACUGUggAAGCu -3'
miRNA:   3'- gguCGCCCGGUacUCGUGACG--UUCGu -5'
18356 5' -57.2 NC_004681.1 + 36297 0.68 0.52708
Target:  5'- aCUGGU-GGCCGagguUGAGCgGCUGCGGGCGc -3'
miRNA:   3'- -GGUCGcCCGGU----ACUCG-UGACGUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.