miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18358 5' -55.5 NC_004681.1 + 26350 0.66 0.803575
Target:  5'- aCCC-CGGCGACuGGGCAguaGGGCUugCCGu -3'
miRNA:   3'- -GGGaGUUGCUG-CCCGUg--UUCGA--GGUc -5'
18358 5' -55.5 NC_004681.1 + 18664 0.66 0.803574
Target:  5'- aCCCUCAGCaGCaucaGGGCaACGGGCagCCGc -3'
miRNA:   3'- -GGGAGUUGcUG----CCCG-UGUUCGa-GGUc -5'
18358 5' -55.5 NC_004681.1 + 34750 0.66 0.803574
Target:  5'- cCCCUUGuCGAaguaGGGgGCAagaAGCUCCGc -3'
miRNA:   3'- -GGGAGUuGCUg---CCCgUGU---UCGAGGUc -5'
18358 5' -55.5 NC_004681.1 + 60009 0.66 0.784643
Target:  5'- gUCCUCAAgccCGGUGGGCACcuGCUCg-- -3'
miRNA:   3'- -GGGAGUU---GCUGCCCGUGuuCGAGguc -5'
18358 5' -55.5 NC_004681.1 + 71690 0.66 0.774948
Target:  5'- aUCUCAGCGAUGGGguuguUGCGGGCcUCAGc -3'
miRNA:   3'- gGGAGUUGCUGCCC-----GUGUUCGaGGUC- -5'
18358 5' -55.5 NC_004681.1 + 14478 0.66 0.774948
Target:  5'- gCCCaccgCAGCGACGGGC-CGAuCUCg-- -3'
miRNA:   3'- -GGGa---GUUGCUGCCCGuGUUcGAGguc -5'
18358 5' -55.5 NC_004681.1 + 12821 0.66 0.774948
Target:  5'- gCCgCUCAAUGGCucacaGCGCAgaAGCUCCAa -3'
miRNA:   3'- -GG-GAGUUGCUGcc---CGUGU--UCGAGGUc -5'
18358 5' -55.5 NC_004681.1 + 12298 0.66 0.774948
Target:  5'- aCCCUCGGCacgGAUGaGGUgacCAucguGCUCCAGg -3'
miRNA:   3'- -GGGAGUUG---CUGC-CCGu--GUu---CGAGGUC- -5'
18358 5' -55.5 NC_004681.1 + 29233 0.66 0.774948
Target:  5'- gUCCUCGGCGAgUGGGC-CGgucugGGCUUCGu -3'
miRNA:   3'- -GGGAGUUGCU-GCCCGuGU-----UCGAGGUc -5'
18358 5' -55.5 NC_004681.1 + 39880 0.66 0.77397
Target:  5'- uUCCUCGACcaGGCGGGCGgAgacccccAGCgcgcggCCAGc -3'
miRNA:   3'- -GGGAGUUG--CUGCCCGUgU-------UCGa-----GGUC- -5'
18358 5' -55.5 NC_004681.1 + 27615 0.67 0.755148
Target:  5'- aCCCUCggUGGCGcuGGCGgCGgcggcGGCUCUGGu -3'
miRNA:   3'- -GGGAGuuGCUGC--CCGU-GU-----UCGAGGUC- -5'
18358 5' -55.5 NC_004681.1 + 60637 0.67 0.754145
Target:  5'- aCCCUCAagucgggucugauGCGcGCGGGCACuaaacgcgccGCUCguGa -3'
miRNA:   3'- -GGGAGU-------------UGC-UGCCCGUGuu--------CGAGguC- -5'
18358 5' -55.5 NC_004681.1 + 28094 0.67 0.745065
Target:  5'- aCCUUCAACGGCGGcaACAacGGgaCCAGc -3'
miRNA:   3'- -GGGAGUUGCUGCCcgUGU--UCgaGGUC- -5'
18358 5' -55.5 NC_004681.1 + 68439 0.67 0.734874
Target:  5'- gCUUCGACGGacuUGGGCGgGGGCUUCu- -3'
miRNA:   3'- gGGAGUUGCU---GCCCGUgUUCGAGGuc -5'
18358 5' -55.5 NC_004681.1 + 27928 0.67 0.724585
Target:  5'- gCCUCGGCGGCacGGCAC-GGCUgUGGg -3'
miRNA:   3'- gGGAGUUGCUGc-CCGUGuUCGAgGUC- -5'
18358 5' -55.5 NC_004681.1 + 24833 0.67 0.714209
Target:  5'- aCCUCAuCGGCGucggcGGCGCGGGCggcggCCGc -3'
miRNA:   3'- gGGAGUuGCUGC-----CCGUGUUCGa----GGUc -5'
18358 5' -55.5 NC_004681.1 + 56270 0.67 0.713167
Target:  5'- aCCCUCAACGGCcacGagauuugccgcaaGUACGAGCUgCCGGu -3'
miRNA:   3'- -GGGAGUUGCUGc--C-------------CGUGUUCGA-GGUC- -5'
18358 5' -55.5 NC_004681.1 + 14514 0.68 0.703757
Target:  5'- aCCUCGAUGACGGuGCGCuugucgccCUCCu- -3'
miRNA:   3'- gGGAGUUGCUGCC-CGUGuuc-----GAGGuc -5'
18358 5' -55.5 NC_004681.1 + 11427 0.68 0.703756
Target:  5'- aCCgUCuccuACGGCGGGCACucGUUCgGa -3'
miRNA:   3'- -GGgAGu---UGCUGCCCGUGuuCGAGgUc -5'
18358 5' -55.5 NC_004681.1 + 16988 0.68 0.703756
Target:  5'- gCCUCAACGAgGccCGCAAGgaCCAGu -3'
miRNA:   3'- gGGAGUUGCUgCccGUGUUCgaGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.