miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18358 5' -55.5 NC_004681.1 + 540 1.1 0.001342
Target:  5'- uCCCUCAACGACGGGCACAAGCUCCAGu -3'
miRNA:   3'- -GGGAGUUGCUGCCCGUGUUCGAGGUC- -5'
18358 5' -55.5 NC_004681.1 + 67962 0.82 0.11814
Target:  5'- gUCUCAuCGACGGGCGCGGGCUCUu- -3'
miRNA:   3'- gGGAGUuGCUGCCCGUGUUCGAGGuc -5'
18358 5' -55.5 NC_004681.1 + 18036 0.78 0.217139
Target:  5'- aCCUCGGCGGCGcGGCGCGuggucgcGGuCUCCGGu -3'
miRNA:   3'- gGGAGUUGCUGC-CCGUGU-------UC-GAGGUC- -5'
18358 5' -55.5 NC_004681.1 + 67425 0.76 0.286899
Target:  5'- gCCCUUcucgAACGACGuGGCGuucuUGAGCUCCGGg -3'
miRNA:   3'- -GGGAG----UUGCUGC-CCGU----GUUCGAGGUC- -5'
18358 5' -55.5 NC_004681.1 + 19382 0.75 0.308559
Target:  5'- gCCUgGGCGACGGGUACA---UCCAGa -3'
miRNA:   3'- gGGAgUUGCUGCCCGUGUucgAGGUC- -5'
18358 5' -55.5 NC_004681.1 + 7009 0.74 0.355554
Target:  5'- aCCCUCGugGACgagGGGCACAucAGCaCCGu -3'
miRNA:   3'- -GGGAGUugCUG---CCCGUGU--UCGaGGUc -5'
18358 5' -55.5 NC_004681.1 + 41830 0.71 0.493287
Target:  5'- aCCaCGACGACGGGCACAccuGCguacCCGa -3'
miRNA:   3'- gGGaGUUGCUGCCCGUGUu--CGa---GGUc -5'
18358 5' -55.5 NC_004681.1 + 72798 0.71 0.493287
Target:  5'- gCCCUUGGCGccGCGGGUGCGGGCauugCCGc -3'
miRNA:   3'- -GGGAGUUGC--UGCCCGUGUUCGa---GGUc -5'
18358 5' -55.5 NC_004681.1 + 5692 0.71 0.503356
Target:  5'- uUCUUCAACccuGACGGGCugGAGCgcggCCu- -3'
miRNA:   3'- -GGGAGUUG---CUGCCCGugUUCGa---GGuc -5'
18358 5' -55.5 NC_004681.1 + 35276 0.71 0.503357
Target:  5'- gCCUCGGCGACGcucGGUGaguGGCUCCAc -3'
miRNA:   3'- gGGAGUUGCUGC---CCGUgu-UCGAGGUc -5'
18358 5' -55.5 NC_004681.1 + 16847 0.71 0.513514
Target:  5'- --aUCAACGACcGGCACAAGCUggCCGa -3'
miRNA:   3'- gggAGUUGCUGcCCGUGUUCGA--GGUc -5'
18358 5' -55.5 NC_004681.1 + 66700 0.71 0.513514
Target:  5'- cUCCgCGGCGGuCGGGUACGAGCccgcaacgCCAGa -3'
miRNA:   3'- -GGGaGUUGCU-GCCCGUGUUCGa-------GGUC- -5'
18358 5' -55.5 NC_004681.1 + 35872 0.71 0.513514
Target:  5'- cCCCUcCGGCuGACuGGgauGCACGGGCUCCAu -3'
miRNA:   3'- -GGGA-GUUG-CUG-CC---CGUGUUCGAGGUc -5'
18358 5' -55.5 NC_004681.1 + 24972 0.71 0.513514
Target:  5'- aCCCcCGGCGACGGGgGCucuGGCggcaCAGg -3'
miRNA:   3'- -GGGaGUUGCUGCCCgUGu--UCGag--GUC- -5'
18358 5' -55.5 NC_004681.1 + 37199 0.71 0.523755
Target:  5'- gUCCUCGACGGCGcGCACGuagauGuCUCCAc -3'
miRNA:   3'- -GGGAGUUGCUGCcCGUGUu----C-GAGGUc -5'
18358 5' -55.5 NC_004681.1 + 23159 0.7 0.554916
Target:  5'- gCCUUCAucaaacagACGACGGGCAuCGAcCUCuCAGg -3'
miRNA:   3'- -GGGAGU--------UGCUGCCCGU-GUUcGAG-GUC- -5'
18358 5' -55.5 NC_004681.1 + 25562 0.7 0.554917
Target:  5'- gCCCUUcuuGCGGUGGGCGCGGGa-CCAGg -3'
miRNA:   3'- -GGGAGu--UGCUGCCCGUGUUCgaGGUC- -5'
18358 5' -55.5 NC_004681.1 + 13142 0.7 0.565428
Target:  5'- cCCUUCGuggcACGGCGGGUACGGGCg---- -3'
miRNA:   3'- -GGGAGU----UGCUGCCCGUGUUCGagguc -5'
18358 5' -55.5 NC_004681.1 + 28815 0.7 0.572817
Target:  5'- gCCUCGucauauaccgacugGCaGGCGcaGGCACGGGCUCCAc -3'
miRNA:   3'- gGGAGU--------------UG-CUGC--CCGUGUUCGAGGUc -5'
18358 5' -55.5 NC_004681.1 + 69261 0.7 0.575991
Target:  5'- gCCCUUGACGGCGcGCAgGuGCUUCGGu -3'
miRNA:   3'- -GGGAGUUGCUGCcCGUgUuCGAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.