miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18359 3' -62.1 NC_004681.1 + 37489 0.66 0.457976
Target:  5'- -cCUCCUGGUGuuCGucGGCaCGGUCUUCg -3'
miRNA:   3'- guGGGGACCACugGC--CCG-GUCGGAAG- -5'
18359 3' -62.1 NC_004681.1 + 10660 0.66 0.457976
Target:  5'- gCGCCCCcGGUGcCCGcGGCC-GUCg-- -3'
miRNA:   3'- -GUGGGGaCCACuGGC-CCGGuCGGaag -5'
18359 3' -62.1 NC_004681.1 + 39092 0.66 0.44866
Target:  5'- aAgCCCUGGUGGCCaccugcgcGGGCaacaCCUUCc -3'
miRNA:   3'- gUgGGGACCACUGG--------CCCGguc-GGAAG- -5'
18359 3' -62.1 NC_004681.1 + 14494 0.66 0.43945
Target:  5'- gGCgCgCUGGUGGCCGGuGCUGGCg--- -3'
miRNA:   3'- gUGgG-GACCACUGGCC-CGGUCGgaag -5'
18359 3' -62.1 NC_004681.1 + 26055 0.66 0.421358
Target:  5'- aGCCCUUGGUG-CCGuGGCCgcAGaCCa-- -3'
miRNA:   3'- gUGGGGACCACuGGC-CCGG--UC-GGaag -5'
18359 3' -62.1 NC_004681.1 + 56202 0.66 0.412482
Target:  5'- uGCCCCUugagucGGUGGCCuGGaCCGGCg-UCg -3'
miRNA:   3'- gUGGGGA------CCACUGGcCC-GGUCGgaAG- -5'
18359 3' -62.1 NC_004681.1 + 58550 0.66 0.403723
Target:  5'- uGCCCa-GGaGACCuGGGCCAGCg-UCa -3'
miRNA:   3'- gUGGGgaCCaCUGG-CCCGGUCGgaAG- -5'
18359 3' -62.1 NC_004681.1 + 14944 0.67 0.395082
Target:  5'- aCACCCCcagguggGGUGACUagcuuGCCAGCCa-- -3'
miRNA:   3'- -GUGGGGa------CCACUGGcc---CGGUCGGaag -5'
18359 3' -62.1 NC_004681.1 + 16398 0.67 0.353714
Target:  5'- cCACCUCcaagGGUGACCaGGCCAuGCgCUa- -3'
miRNA:   3'- -GUGGGGa---CCACUGGcCCGGU-CG-GAag -5'
18359 3' -62.1 NC_004681.1 + 65073 0.68 0.345816
Target:  5'- -uCCCCgcucgGGUGgucGCCGaGGUCGGCCUg- -3'
miRNA:   3'- guGGGGa----CCAC---UGGC-CCGGUCGGAag -5'
18359 3' -62.1 NC_004681.1 + 45066 0.68 0.308243
Target:  5'- gGCCgUUGGUGACCaGGCCcuuggAGCCcgCg -3'
miRNA:   3'- gUGGgGACCACUGGcCCGG-----UCGGaaG- -5'
18359 3' -62.1 NC_004681.1 + 8718 0.68 0.308243
Target:  5'- cCGCCCgUGGUGGucucauUCGGGCCguAGCCc-- -3'
miRNA:   3'- -GUGGGgACCACU------GGCCCGG--UCGGaag -5'
18359 3' -62.1 NC_004681.1 + 75071 0.69 0.273868
Target:  5'- cCACCCCgucaUGGgcggcagGGCCGGGUaGGCCgUCa -3'
miRNA:   3'- -GUGGGG----ACCa------CUGGCCCGgUCGGaAG- -5'
18359 3' -62.1 NC_004681.1 + 56886 0.72 0.189073
Target:  5'- gACCCC-GGagaugGACCGGGUCAG-CUUCg -3'
miRNA:   3'- gUGGGGaCCa----CUGGCCCGGUCgGAAG- -5'
18359 3' -62.1 NC_004681.1 + 61023 0.72 0.175159
Target:  5'- aCGCCCUcGGUacgGGCCagcugGGcGCCAGCCUUCa -3'
miRNA:   3'- -GUGGGGaCCA---CUGG-----CC-CGGUCGGAAG- -5'
18359 3' -62.1 NC_004681.1 + 18213 0.74 0.135165
Target:  5'- gCACCCCcgGGUGuACCGGGCgGGCa--- -3'
miRNA:   3'- -GUGGGGa-CCAC-UGGCCCGgUCGgaag -5'
18359 3' -62.1 NC_004681.1 + 1530 1.09 0.000327
Target:  5'- uCACCCCUGGUGACCGGGCCAGCCUUCa -3'
miRNA:   3'- -GUGGGGACCACUGGCCCGGUCGGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.