miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18359 5' -56.5 NC_004681.1 + 57636 0.66 0.763645
Target:  5'- cGGGGGugcgccGGGAGGC-GCUCCAGGAc- -3'
miRNA:   3'- cCCCUCu-----CCUUCUGcCGGGGUUCUug -5'
18359 5' -56.5 NC_004681.1 + 19765 0.66 0.742622
Target:  5'- uGGGGuGA-GAAGuggacgcugguguGCGGCUCCGcuaAGAACg -3'
miRNA:   3'- -CCCCuCUcCUUC-------------UGCCGGGGU---UCUUG- -5'
18359 5' -56.5 NC_004681.1 + 1056 0.66 0.733465
Target:  5'- --cGAGAGGAuGuACGGCCCgauGGAGCc -3'
miRNA:   3'- cccCUCUCCUuC-UGCCGGGgu-UCUUG- -5'
18359 5' -56.5 NC_004681.1 + 2028 0.66 0.733465
Target:  5'- aGGuGGucGuGGAGGGCGGCCgcaCCGcGGACa -3'
miRNA:   3'- -CC-CCu-CuCCUUCUGCCGG---GGUuCUUG- -5'
18359 5' -56.5 NC_004681.1 + 10518 0.66 0.7232
Target:  5'- cGGGAGucgacGGAGGACGGUcauccuCCCAGuuGCc -3'
miRNA:   3'- cCCCUCu----CCUUCUGCCG------GGGUUcuUG- -5'
18359 5' -56.5 NC_004681.1 + 40209 0.66 0.7232
Target:  5'- uGGGGucguGGAGGAGcuuGACGGUugCgCGGGAGCc -3'
miRNA:   3'- -CCCC----UCUCCUU---CUGCCG--GgGUUCUUG- -5'
18359 5' -56.5 NC_004681.1 + 31239 0.66 0.71285
Target:  5'- cGGGGuGAGuagugcGGCGGCCgCGAGcGCg -3'
miRNA:   3'- -CCCCuCUCcuu---CUGCCGGgGUUCuUG- -5'
18359 5' -56.5 NC_004681.1 + 53001 0.67 0.701379
Target:  5'- cGGGGAuGAGGAucaucggAGGCGgggucGCCCCGGcGAUg -3'
miRNA:   3'- -CCCCU-CUCCU-------UCUGC-----CGGGGUUcUUG- -5'
18359 5' -56.5 NC_004681.1 + 48979 0.67 0.691936
Target:  5'- uGGcGGuGGGGAccGGcccacuGCGGUCCCAGGuAACg -3'
miRNA:   3'- -CC-CCuCUCCU--UC------UGCCGGGGUUC-UUG- -5'
18359 5' -56.5 NC_004681.1 + 67251 0.67 0.681393
Target:  5'- --cGGGAGGAAGGuCGGCaggaugCCGGGGGCg -3'
miRNA:   3'- cccCUCUCCUUCU-GCCGg-----GGUUCUUG- -5'
18359 5' -56.5 NC_004681.1 + 66172 0.67 0.681393
Target:  5'- aGGGGGccGAGGu-GAccCGGCCCCcucacGAACg -3'
miRNA:   3'- -CCCCU--CUCCuuCU--GCCGGGGuu---CUUG- -5'
18359 5' -56.5 NC_004681.1 + 6762 0.67 0.660184
Target:  5'- cGGccGAGaAGGAcuACGGCCCCAAuGGCg -3'
miRNA:   3'- cCC--CUC-UCCUucUGCCGGGGUUcUUG- -5'
18359 5' -56.5 NC_004681.1 + 54400 0.67 0.660184
Target:  5'- cGGGGuuGAGGA--ACGGCgCCAgcaccuugcccAGGACg -3'
miRNA:   3'- -CCCCu-CUCCUucUGCCGgGGU-----------UCUUG- -5'
18359 5' -56.5 NC_004681.1 + 43290 0.67 0.649538
Target:  5'- aGGGcGucGAAGaugccaGCGGCCaCCAGGAACu -3'
miRNA:   3'- cCCCuCucCUUC------UGCCGG-GGUUCUUG- -5'
18359 5' -56.5 NC_004681.1 + 53608 0.68 0.62821
Target:  5'- gGGuGGaAGAGGcccAGACGGaggCCAAGAACg -3'
miRNA:   3'- -CC-CC-UCUCCu--UCUGCCgg-GGUUCUUG- -5'
18359 5' -56.5 NC_004681.1 + 39396 0.68 0.617547
Target:  5'- gGGGGAGAGGAAgcGAUGaGCgaCCCGGuAACc -3'
miRNA:   3'- -CCCCUCUCCUU--CUGC-CG--GGGUUcUUG- -5'
18359 5' -56.5 NC_004681.1 + 57207 0.68 0.617547
Target:  5'- aGGGGGcGGAucGCcGCCCCAGGAAg -3'
miRNA:   3'- cCCCUCuCCUucUGcCGGGGUUCUUg -5'
18359 5' -56.5 NC_004681.1 + 46641 0.68 0.616481
Target:  5'- aGGGGuuacgugAGAGGGAuuguGAUGGCcgCCCAGGggUu -3'
miRNA:   3'- -CCCC-------UCUCCUU----CUGCCG--GGGUUCuuG- -5'
18359 5' -56.5 NC_004681.1 + 58126 0.68 0.606895
Target:  5'- aGGGAGGGGAc--CGGCCUaCGAGcAGCa -3'
miRNA:   3'- cCCCUCUCCUucuGCCGGG-GUUC-UUG- -5'
18359 5' -56.5 NC_004681.1 + 35210 0.68 0.596264
Target:  5'- uGGGAGAGG---GCGGCCaCCAucAACg -3'
miRNA:   3'- cCCCUCUCCuucUGCCGG-GGUucUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.