miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18359 5' -56.5 NC_004681.1 + 1568 1.12 0.000724
Target:  5'- gGGGGAGAGGAAGACGGCCCCAAGAACg -3'
miRNA:   3'- -CCCCUCUCCUUCUGCCGGGGUUCUUG- -5'
18359 5' -56.5 NC_004681.1 + 19765 0.66 0.742622
Target:  5'- uGGGGuGA-GAAGuggacgcugguguGCGGCUCCGcuaAGAACg -3'
miRNA:   3'- -CCCCuCUcCUUC-------------UGCCGGGGU---UCUUG- -5'
18359 5' -56.5 NC_004681.1 + 1056 0.66 0.733465
Target:  5'- --cGAGAGGAuGuACGGCCCgauGGAGCc -3'
miRNA:   3'- cccCUCUCCUuC-UGCCGGGgu-UCUUG- -5'
18359 5' -56.5 NC_004681.1 + 2028 0.66 0.733465
Target:  5'- aGGuGGucGuGGAGGGCGGCCgcaCCGcGGACa -3'
miRNA:   3'- -CC-CCu-CuCCUUCUGCCGG---GGUuCUUG- -5'
18359 5' -56.5 NC_004681.1 + 40209 0.66 0.7232
Target:  5'- uGGGGucguGGAGGAGcuuGACGGUugCgCGGGAGCc -3'
miRNA:   3'- -CCCC----UCUCCUU---CUGCCG--GgGUUCUUG- -5'
18359 5' -56.5 NC_004681.1 + 6762 0.67 0.660184
Target:  5'- cGGccGAGaAGGAcuACGGCCCCAAuGGCg -3'
miRNA:   3'- cCC--CUC-UCCUucUGCCGGGGUUcUUG- -5'
18359 5' -56.5 NC_004681.1 + 53608 0.68 0.62821
Target:  5'- gGGuGGaAGAGGcccAGACGGaggCCAAGAACg -3'
miRNA:   3'- -CC-CC-UCUCCu--UCUGCCgg-GGUUCUUG- -5'
18359 5' -56.5 NC_004681.1 + 57207 0.68 0.617547
Target:  5'- aGGGGGcGGAucGCcGCCCCAGGAAg -3'
miRNA:   3'- cCCCUCuCCUucUGcCGGGGUUCUUg -5'
18359 5' -56.5 NC_004681.1 + 58126 0.68 0.606895
Target:  5'- aGGGAGGGGAc--CGGCCUaCGAGcAGCa -3'
miRNA:   3'- cCCCUCUCCUucuGCCGGG-GUUC-UUG- -5'
18359 5' -56.5 NC_004681.1 + 6394 0.71 0.463212
Target:  5'- aGGGGGAGGAGGcccCGGCgCCGA-AGCg -3'
miRNA:   3'- cCCCUCUCCUUCu--GCCGgGGUUcUUG- -5'
18359 5' -56.5 NC_004681.1 + 46575 0.71 0.457421
Target:  5'- gGGGGAuGAGGAugccugacgaagcccAGAcCGGCCcacucgCCGAGGACc -3'
miRNA:   3'- -CCCCU-CUCCU---------------UCU-GCCGG------GGUUCUUG- -5'
18359 5' -56.5 NC_004681.1 + 40590 0.69 0.575096
Target:  5'- cGGGAugGAGcGAGGC-GCCCCGAGAAg -3'
miRNA:   3'- cCCCU--CUCcUUCUGcCGGGGUUCUUg -5'
18359 5' -56.5 NC_004681.1 + 67301 0.69 0.575096
Target:  5'- aGGGGuucuGGccGAUGGCCgCGGGGGCg -3'
miRNA:   3'- -CCCCucu-CCuuCUGCCGGgGUUCUUG- -5'
18359 5' -56.5 NC_004681.1 + 72949 0.69 0.570882
Target:  5'- aGGGGucgagcgGGAGGggGGCuucgucacggucgaGcGCCUCGGGGACg -3'
miRNA:   3'- -CCCC-------UCUCCuuCUG--------------C-CGGGGUUCUUG- -5'
18359 5' -56.5 NC_004681.1 + 37183 0.69 0.564574
Target:  5'- cGGGugcGAGGcAGAaGGCCCCAauccuguuaauGGAACa -3'
miRNA:   3'- cCCCu--CUCCuUCUgCCGGGGU-----------UCUUG- -5'
18359 5' -56.5 NC_004681.1 + 33744 0.71 0.444062
Target:  5'- cGGGAGAGGu---UGGCCCC--GAACa -3'
miRNA:   3'- cCCCUCUCCuucuGCCGGGGuuCUUG- -5'
18359 5' -56.5 NC_004681.1 + 24633 0.71 0.425364
Target:  5'- cGGGGuggcguucuuGGAGaGAAGcAUGGCgCCGAGGACu -3'
miRNA:   3'- -CCCC----------UCUC-CUUC-UGCCGgGGUUCUUG- -5'
18359 5' -56.5 NC_004681.1 + 26138 0.72 0.407144
Target:  5'- aGGGuGAGGGGGAGGuagaGGCCgCA-GAGCg -3'
miRNA:   3'- -CCC-CUCUCCUUCUg---CCGGgGUuCUUG- -5'
18359 5' -56.5 NC_004681.1 + 74062 0.72 0.398219
Target:  5'- cGGuGAgGAGGgcGAUGGCCUgGGGAACu -3'
miRNA:   3'- cCC-CU-CUCCuuCUGCCGGGgUUCUUG- -5'
18359 5' -56.5 NC_004681.1 + 57636 0.66 0.763645
Target:  5'- cGGGGGugcgccGGGAGGC-GCUCCAGGAc- -3'
miRNA:   3'- cCCCUCu-----CCUUCUGcCGGGGUUCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.