miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18360 3' -53.2 NC_004681.1 + 59793 0.65 0.90326
Target:  5'- cGGAUGCGgugacagcgGCGGcgcccuugccagcaGccgGGACGAUGCCCAg -3'
miRNA:   3'- -CUUGCGUa--------UGCC--------------Ca--CCUGCUAUGGGU- -5'
18360 3' -53.2 NC_004681.1 + 13613 0.66 0.891483
Target:  5'- -cGCGCGcACaGGUGG-CGGUACCa- -3'
miRNA:   3'- cuUGCGUaUGcCCACCuGCUAUGGgu -5'
18360 3' -53.2 NC_004681.1 + 47422 0.66 0.891483
Target:  5'- gGGAUGCAcgGUGGGagucgGGugGAUGCUCAa -3'
miRNA:   3'- -CUUGCGUa-UGCCCa----CCugCUAUGGGU- -5'
18360 3' -53.2 NC_004681.1 + 53601 0.66 0.891483
Target:  5'- --cCGCAgu-GGGUGGAaGAgGCCCAg -3'
miRNA:   3'- cuuGCGUaugCCCACCUgCUaUGGGU- -5'
18360 3' -53.2 NC_004681.1 + 32011 0.66 0.891483
Target:  5'- cGGACGCugGUGCcguagcggGGGUGGGCGcggACCUc -3'
miRNA:   3'- -CUUGCG--UAUG--------CCCACCUGCua-UGGGu -5'
18360 3' -53.2 NC_004681.1 + 57736 0.66 0.868893
Target:  5'- gGGGCGCcgAUGCcGG-GGAugcCGAUGCCCAu -3'
miRNA:   3'- -CUUGCG--UAUGcCCaCCU---GCUAUGGGU- -5'
18360 3' -53.2 NC_004681.1 + 26733 0.68 0.808095
Target:  5'- cGACGCAguUGCGuGcGGAgGAUGCCCGc -3'
miRNA:   3'- cUUGCGU--AUGCcCaCCUgCUAUGGGU- -5'
18360 3' -53.2 NC_004681.1 + 61200 0.68 0.798608
Target:  5'- ---gGCAUACGGGUGGcgaccuugauGCGcucACCCGu -3'
miRNA:   3'- cuugCGUAUGCCCACC----------UGCua-UGGGU- -5'
18360 3' -53.2 NC_004681.1 + 19122 0.69 0.759056
Target:  5'- --uCGCAgcUGGGUGGACGccuggACCCc -3'
miRNA:   3'- cuuGCGUauGCCCACCUGCua---UGGGu -5'
18360 3' -53.2 NC_004681.1 + 13823 0.69 0.759056
Target:  5'- --uCGUGUACGGGggacUGGACGAUAagUCCGu -3'
miRNA:   3'- cuuGCGUAUGCCC----ACCUGCUAU--GGGU- -5'
18360 3' -53.2 NC_004681.1 + 48743 0.69 0.717463
Target:  5'- --cCGgGUGCGaGUGGACGGUGCCa- -3'
miRNA:   3'- cuuGCgUAUGCcCACCUGCUAUGGgu -5'
18360 3' -53.2 NC_004681.1 + 25362 0.69 0.716403
Target:  5'- uGGCGCAggACacggucgGGGUGGGCGucGCCCAc -3'
miRNA:   3'- cUUGCGUa-UG-------CCCACCUGCuaUGGGU- -5'
18360 3' -53.2 NC_004681.1 + 35840 0.7 0.706829
Target:  5'- cGAAC-CGgAUGGGUGGGCGGUcGCUCAu -3'
miRNA:   3'- -CUUGcGUaUGCCCACCUGCUA-UGGGU- -5'
18360 3' -53.2 NC_004681.1 + 11369 0.7 0.685357
Target:  5'- cGAACGCAauUACGGGgugGGAcuucauguauCGGU-CCCAg -3'
miRNA:   3'- -CUUGCGU--AUGCCCa--CCU----------GCUAuGGGU- -5'
18360 3' -53.2 NC_004681.1 + 22274 0.7 0.685357
Target:  5'- --cCGCGUgGCGGcGUGGGCGcccUGCCCGu -3'
miRNA:   3'- cuuGCGUA-UGCC-CACCUGCu--AUGGGU- -5'
18360 3' -53.2 NC_004681.1 + 203 0.7 0.668031
Target:  5'- -uAUGCAUGCGGGUaugcaugcGGAugcaaggacuagcuaCGGUGCCCGa -3'
miRNA:   3'- cuUGCGUAUGCCCA--------CCU---------------GCUAUGGGU- -5'
18360 3' -53.2 NC_004681.1 + 1737 1.09 0.002561
Target:  5'- uGAACGCAUACGGGUGGACGAUACCCAg -3'
miRNA:   3'- -CUUGCGUAUGCCCACCUGCUAUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.