miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18360 5' -60.7 NC_004681.1 + 35357 0.66 0.553428
Target:  5'- gCCCAGGCg---GCCUcaUCCUCGCugCGUCc -3'
miRNA:   3'- -GGGUCCGguagCGGG--AGGAGUG--GCAG- -5'
18360 5' -60.7 NC_004681.1 + 59151 0.66 0.543324
Target:  5'- -aCAGGCCggUGCUCggagCGCCGUCg -3'
miRNA:   3'- ggGUCCGGuaGCGGGaggaGUGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 3641 0.66 0.533283
Target:  5'- -gCAGGCCGcccUCGCCUUCgacgUCGCCGcCc -3'
miRNA:   3'- ggGUCCGGU---AGCGGGAGg---AGUGGCaG- -5'
18360 5' -60.7 NC_004681.1 + 61013 0.66 0.523308
Target:  5'- uUCCAGGCCcaCGCCCUCggUACgGg- -3'
miRNA:   3'- -GGGUCCGGuaGCGGGAGgaGUGgCag -5'
18360 5' -60.7 NC_004681.1 + 45077 0.66 0.523308
Target:  5'- aCCAGGCCcuuggaGCCCgcggaCUCgaugagcauGCCGUCg -3'
miRNA:   3'- gGGUCCGGuag---CGGGag---GAG---------UGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 12336 0.66 0.513406
Target:  5'- gCCGGucucGCCGaacaCGCCCUucaCCUaCACCGUCu -3'
miRNA:   3'- gGGUC----CGGUa---GCGGGA---GGA-GUGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 43650 0.66 0.513406
Target:  5'- aCCCuGGCUucguaccUCGCCCUUCagccCGCCGaUCa -3'
miRNA:   3'- -GGGuCCGGu------AGCGGGAGGa---GUGGC-AG- -5'
18360 5' -60.7 NC_004681.1 + 10899 0.66 0.503581
Target:  5'- cUCCAGGCgCGUCGCCaccucgugCUCCaggcgggCGCCG-Cg -3'
miRNA:   3'- -GGGUCCG-GUAGCGG--------GAGGa------GUGGCaG- -5'
18360 5' -60.7 NC_004681.1 + 31712 0.66 0.503581
Target:  5'- aCCAGcccuCCAUCGCgCUCCUguCCGa- -3'
miRNA:   3'- gGGUCc---GGUAGCGgGAGGAguGGCag -5'
18360 5' -60.7 NC_004681.1 + 62366 0.67 0.497726
Target:  5'- aUCCGGGUCAUCGgauugcccgcgagguCCUUCaucggCUCGCCGUUc -3'
miRNA:   3'- -GGGUCCGGUAGC---------------GGGAG-----GAGUGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 63756 0.67 0.493839
Target:  5'- aCCUcGGCCAcguacUCGgCCUCgUCcaugcgGCCGUCa -3'
miRNA:   3'- -GGGuCCGGU-----AGCgGGAGgAG------UGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 61965 0.67 0.484184
Target:  5'- uCCgGGGaCCAgUCGCCUUCacgcaUCGCgGUCu -3'
miRNA:   3'- -GGgUCC-GGU-AGCGGGAGg----AGUGgCAG- -5'
18360 5' -60.7 NC_004681.1 + 25609 0.67 0.484184
Target:  5'- cCCCaccgaAGGCCccaUGCCCUcugaCCUCAccuCCGUCa -3'
miRNA:   3'- -GGG-----UCCGGua-GCGGGA----GGAGU---GGCAG- -5'
18360 5' -60.7 NC_004681.1 + 36326 0.67 0.47462
Target:  5'- gCCCgcuuGGGCCAUgaGUCCcgCCUCGCUGcCa -3'
miRNA:   3'- -GGG----UCCGGUAg-CGGGa-GGAGUGGCaG- -5'
18360 5' -60.7 NC_004681.1 + 49311 0.67 0.47462
Target:  5'- -gCGGGCgGUCuGCaCaaCCUCACCGUCc -3'
miRNA:   3'- ggGUCCGgUAG-CG-GgaGGAGUGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 13277 0.67 0.47462
Target:  5'- gUCCAGGCCAUCGag-UCCgagggCGCCcuGUCg -3'
miRNA:   3'- -GGGUCCGGUAGCgggAGGa----GUGG--CAG- -5'
18360 5' -60.7 NC_004681.1 + 15936 0.67 0.455783
Target:  5'- aUCCAGGCCAUCGCUggcgccauCUCgUUCAUUGg- -3'
miRNA:   3'- -GGGUCCGGUAGCGG--------GAG-GAGUGGCag -5'
18360 5' -60.7 NC_004681.1 + 2323 0.67 0.455783
Target:  5'- aCCgAGGUCggCGCCCaCUUCugCGUg -3'
miRNA:   3'- -GGgUCCGGuaGCGGGaGGAGugGCAg -5'
18360 5' -60.7 NC_004681.1 + 3135 0.68 0.437356
Target:  5'- gCCCAGcGgC-UCGCCCUCCUCcaggGCCu-- -3'
miRNA:   3'- -GGGUC-CgGuAGCGGGAGGAG----UGGcag -5'
18360 5' -60.7 NC_004681.1 + 41382 0.68 0.437356
Target:  5'- -gCAGGUCAUCGUCggCggCACCGUCa -3'
miRNA:   3'- ggGUCCGGUAGCGGgaGgaGUGGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.