miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18360 5' -60.7 NC_004681.1 + 1771 1.11 0.000341
Target:  5'- cCCCAGGCCAUCGCCCUCCUCACCGUCg -3'
miRNA:   3'- -GGGUCCGGUAGCGGGAGGAGUGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 61119 0.84 0.035815
Target:  5'- -gCAGGCCGUCGCCaaCUUCACCGUCg -3'
miRNA:   3'- ggGUCCGGUAGCGGgaGGAGUGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 56202 0.82 0.04984
Target:  5'- uCCCAGGCU--UGCCCacCCUCGCCGUCa -3'
miRNA:   3'- -GGGUCCGGuaGCGGGa-GGAGUGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 62509 0.76 0.136247
Target:  5'- gCCCAGGCCAUgggcacccuggcagcCG-CCUCCgaCACCGUCu -3'
miRNA:   3'- -GGGUCCGGUA---------------GCgGGAGGa-GUGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 62434 0.73 0.21579
Target:  5'- gUCCAGGCCGUCGCCgcgguugugCUUCUCGaugcguuccugcuccUCGUCg -3'
miRNA:   3'- -GGGUCCGGUAGCGG---------GAGGAGU---------------GGCAG- -5'
18360 5' -60.7 NC_004681.1 + 44391 0.71 0.259958
Target:  5'- gUCCGGGCaacUCaCCCUCCUCGCCa-- -3'
miRNA:   3'- -GGGUCCGgu-AGcGGGAGGAGUGGcag -5'
18360 5' -60.7 NC_004681.1 + 28226 0.71 0.272746
Target:  5'- uCgCAGGUCGUCGUCguccaucagauuUUCCUUGCCGUCa -3'
miRNA:   3'- -GgGUCCGGUAGCGG------------GAGGAGUGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 63387 0.71 0.281994
Target:  5'- gCCgGGGCCucGacggugaucgucacuUCGCCgUCCUCGuCCGUCa -3'
miRNA:   3'- -GGgUCCGG--U---------------AGCGGgAGGAGU-GGCAG- -5'
18360 5' -60.7 NC_004681.1 + 27202 0.71 0.292867
Target:  5'- aCCGGGCgaaguacaccggCGUCGCgccCCUCCUgGCCGUg -3'
miRNA:   3'- gGGUCCG------------GUAGCG---GGAGGAgUGGCAg -5'
18360 5' -60.7 NC_004681.1 + 24772 0.7 0.304063
Target:  5'- uCUCAGGCCGUCGaggaggucauaaCU-CUCGCCGUCg -3'
miRNA:   3'- -GGGUCCGGUAGCgg----------GAgGAGUGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 67884 0.7 0.336537
Target:  5'- aCCCuucGUCGUCGCCCUUgaCACCGg- -3'
miRNA:   3'- -GGGuc-CGGUAGCGGGAGgaGUGGCag -5'
18360 5' -60.7 NC_004681.1 + 39175 0.69 0.344261
Target:  5'- aUCCGGGCCGcggagaugcUCGCCCUCgacgUCGaggaCGUCa -3'
miRNA:   3'- -GGGUCCGGU---------AGCGGGAGg---AGUg---GCAG- -5'
18360 5' -60.7 NC_004681.1 + 44132 0.69 0.344261
Target:  5'- cCCCgAGGCCGcggGCCUggcCCUCACCGg- -3'
miRNA:   3'- -GGG-UCCGGUag-CGGGa--GGAGUGGCag -5'
18360 5' -60.7 NC_004681.1 + 30046 0.69 0.344261
Target:  5'- gCCGcGGCCAUCGgCCUCggagCUCccGCUGUCg -3'
miRNA:   3'- gGGU-CCGGUAGCgGGAG----GAG--UGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 14569 0.69 0.368191
Target:  5'- aCCAcGGCCgcaGUCGCCUUCggCACCGg- -3'
miRNA:   3'- gGGU-CCGG---UAGCGGGAGgaGUGGCag -5'
18360 5' -60.7 NC_004681.1 + 30310 0.68 0.393238
Target:  5'- uUCCAGccgccGUCGUCGCCCUUguaguaggggUCGCCGUCg -3'
miRNA:   3'- -GGGUC-----CGGUAGCGGGAGg---------AGUGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 3913 0.68 0.393238
Target:  5'- aUCC-GGCCGaugaggacaUCGUCggaucaUUCCUCACCGUCg -3'
miRNA:   3'- -GGGuCCGGU---------AGCGG------GAGGAGUGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 19804 0.68 0.39666
Target:  5'- cUCCAcggugaaggcgaugcGGagGUCGCCCUCCUUGgCGUCg -3'
miRNA:   3'- -GGGU---------------CCggUAGCGGGAGGAGUgGCAG- -5'
18360 5' -60.7 NC_004681.1 + 579 0.68 0.41759
Target:  5'- cCCCAGGCgAguuccuucagggCGCCaUCgaCGCCGUCg -3'
miRNA:   3'- -GGGUCCGgUa-----------GCGGgAGgaGUGGCAG- -5'
18360 5' -60.7 NC_004681.1 + 7246 0.68 0.419365
Target:  5'- cUCCAGGCCAUCcacgacgcgGCCgUCCaccucggCGCCGa- -3'
miRNA:   3'- -GGGUCCGGUAG---------CGGgAGGa------GUGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.