Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18361 | 3' | -56 | NC_004681.1 | + | 61713 | 0.66 | 0.725978 |
Target: 5'- cGCCUGaagcUGGAGUCCgucCGCAAGGa- -3' miRNA: 3'- -CGGACca--GCCUCAGGac-GCGUUCUac -5' |
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18361 | 3' | -56 | NC_004681.1 | + | 16509 | 0.66 | 0.725978 |
Target: 5'- cGCCguc-CGGGGUCCUGgccaCGCAGGAg- -3' miRNA: 3'- -CGGaccaGCCUCAGGAC----GCGUUCUac -5' |
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18361 | 3' | -56 | NC_004681.1 | + | 13510 | 0.67 | 0.704044 |
Target: 5'- gGCCUcGUCGGAGUCCaaccaccagucggUGCGCu----- -3' miRNA: 3'- -CGGAcCAGCCUCAGG-------------ACGCGuucuac -5' |
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18361 | 3' | -56 | NC_004681.1 | + | 39094 | 0.67 | 0.694548 |
Target: 5'- uCCUGGcgaaagUGGGGUCCUGaugaacgaGCAgaGGAUGg -3' miRNA: 3'- cGGACCa-----GCCUCAGGACg-------CGU--UCUAC- -5' |
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18361 | 3' | -56 | NC_004681.1 | + | 8519 | 0.67 | 0.67329 |
Target: 5'- gGCCaGGUCgaGGAGUUCgaccucaCGCGAGAUGc -3' miRNA: 3'- -CGGaCCAG--CCUCAGGac-----GCGUUCUAC- -5' |
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18361 | 3' | -56 | NC_004681.1 | + | 49491 | 0.68 | 0.651883 |
Target: 5'- uGCCcagucGcCGGGGUCCUGCGCAAc--- -3' miRNA: 3'- -CGGac---CaGCCUCAGGACGCGUUcuac -5' |
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18361 | 3' | -56 | NC_004681.1 | + | 3057 | 0.92 | 0.018582 |
Target: 5'- gGCCUGGU-GGcAGUCCUGCGCAAGAUGg -3' miRNA: 3'- -CGGACCAgCC-UCAGGACGCGUUCUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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