miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18361 5' -56.4 NC_004681.1 + 13397 0.66 0.743006
Target:  5'- aAGCACaa-CCGCGGcGACgGCCUGGa- -3'
miRNA:   3'- -UCGUGcagGGCGUC-CUGaUGGACUag -5'
18361 5' -56.4 NC_004681.1 + 62470 0.66 0.732743
Target:  5'- gGGCACGaCCCcacGguGGuCUAcgaacuCCUGAUCa -3'
miRNA:   3'- -UCGUGCaGGG---CguCCuGAU------GGACUAG- -5'
18361 5' -56.4 NC_004681.1 + 29886 0.66 0.722383
Target:  5'- cGCA-GUCuaGCAGGGCUugacuUCUGGUCu -3'
miRNA:   3'- uCGUgCAGggCGUCCUGAu----GGACUAG- -5'
18361 5' -56.4 NC_004681.1 + 43040 0.66 0.711938
Target:  5'- cGC-CGUCCUGgAcGGACU-CCUGGUa -3'
miRNA:   3'- uCGuGCAGGGCgU-CCUGAuGGACUAg -5'
18361 5' -56.4 NC_004681.1 + 1503 0.67 0.690834
Target:  5'- uGGCccaauacuCGUCCCGCuucGGACUcaccCCUGGUg -3'
miRNA:   3'- -UCGu-------GCAGGGCGu--CCUGAu---GGACUAg -5'
18361 5' -56.4 NC_004681.1 + 47712 0.67 0.690834
Target:  5'- cGC-CGUugCCCGCGGGGCcguCgCUGGUCc -3'
miRNA:   3'- uCGuGCA--GGGCGUCCUGau-G-GACUAG- -5'
18361 5' -56.4 NC_004681.1 + 26965 0.67 0.687647
Target:  5'- aGGCGCGagaggCCCGUcagcaugccgauauAGGugUugCUGAUg -3'
miRNA:   3'- -UCGUGCa----GGGCG--------------UCCugAugGACUAg -5'
18361 5' -56.4 NC_004681.1 + 30742 0.67 0.680195
Target:  5'- cGGCAUGcucaucgagUCCGCGGG-CUccaaggGCCUGGUCa -3'
miRNA:   3'- -UCGUGCa--------GGGCGUCCuGA------UGGACUAG- -5'
18361 5' -56.4 NC_004681.1 + 39746 0.67 0.669513
Target:  5'- gAGCACGuUCCCGCAcauGGuCcGCgCUGAUg -3'
miRNA:   3'- -UCGUGC-AGGGCGU---CCuGaUG-GACUAg -5'
18361 5' -56.4 NC_004681.1 + 8291 0.67 0.637304
Target:  5'- uGGCGCGgacgCCGCcaAGGACgGCCUGGa- -3'
miRNA:   3'- -UCGUGCag--GGCG--UCCUGaUGGACUag -5'
18361 5' -56.4 NC_004681.1 + 14812 0.68 0.615793
Target:  5'- cAGCugG-CCCGUaccgAGGGCguggGCCUGGa- -3'
miRNA:   3'- -UCGugCaGGGCG----UCCUGa---UGGACUag -5'
18361 5' -56.4 NC_004681.1 + 45810 0.68 0.605054
Target:  5'- gAGCuc--CCUGCAGGACUccgaacGCCUGAUg -3'
miRNA:   3'- -UCGugcaGGGCGUCCUGA------UGGACUAg -5'
18361 5' -56.4 NC_004681.1 + 5374 0.68 0.594337
Target:  5'- cGCGCGg-CCGCAGGACcACCaUGGc- -3'
miRNA:   3'- uCGUGCagGGCGUCCUGaUGG-ACUag -5'
18361 5' -56.4 NC_004681.1 + 72736 0.69 0.530944
Target:  5'- aGGUA-GUCCUGCGGGACgUGCUUGGc- -3'
miRNA:   3'- -UCGUgCAGGGCGUCCUG-AUGGACUag -5'
18361 5' -56.4 NC_004681.1 + 64827 0.7 0.50015
Target:  5'- gGGCAC--CCCGUGGGACUgguACCUGcgCc -3'
miRNA:   3'- -UCGUGcaGGGCGUCCUGA---UGGACuaG- -5'
18361 5' -56.4 NC_004681.1 + 23515 0.7 0.480066
Target:  5'- cGGCACcaaCCCGCAGGACgucauCgUGAUUg -3'
miRNA:   3'- -UCGUGca-GGGCGUCCUGau---GgACUAG- -5'
18361 5' -56.4 NC_004681.1 + 25704 0.7 0.470172
Target:  5'- uGUACGugacaUCgCCGCAGGGCUacuACCUGAa- -3'
miRNA:   3'- uCGUGC-----AG-GGCGUCCUGA---UGGACUag -5'
18361 5' -56.4 NC_004681.1 + 39336 0.71 0.441137
Target:  5'- cGGCugGUacuaCCCGUucGGGCUcggauacaacaGCCUGAUCg -3'
miRNA:   3'- -UCGugCA----GGGCGu-CCUGA-----------UGGACUAG- -5'
18361 5' -56.4 NC_004681.1 + 39016 0.71 0.404062
Target:  5'- cAGcCACGgCCCGCggcgacaaagAGGACUGCCUaGUCa -3'
miRNA:   3'- -UC-GUGCaGGGCG----------UCCUGAUGGAcUAG- -5'
18361 5' -56.4 NC_004681.1 + 17309 0.76 0.220554
Target:  5'- cGCGCGUgCCCGCGGGACgcUACaCgcagGAUCa -3'
miRNA:   3'- uCGUGCA-GGGCGUCCUG--AUG-Ga---CUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.