Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18361 | 5' | -56.4 | NC_004681.1 | + | 3099 | 1.1 | 0.000907 |
Target: 5'- aAGCACGUCCCGCAGGACUACCUGAUCg -3' miRNA: 3'- -UCGUGCAGGGCGUCCUGAUGGACUAG- -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 13397 | 0.66 | 0.743006 |
Target: 5'- aAGCACaa-CCGCGGcGACgGCCUGGa- -3' miRNA: 3'- -UCGUGcagGGCGUC-CUGaUGGACUag -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 62470 | 0.66 | 0.732743 |
Target: 5'- gGGCACGaCCCcacGguGGuCUAcgaacuCCUGAUCa -3' miRNA: 3'- -UCGUGCaGGG---CguCCuGAU------GGACUAG- -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 29886 | 0.66 | 0.722383 |
Target: 5'- cGCA-GUCuaGCAGGGCUugacuUCUGGUCu -3' miRNA: 3'- uCGUgCAGggCGUCCUGAu----GGACUAG- -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 1503 | 0.67 | 0.690834 |
Target: 5'- uGGCccaauacuCGUCCCGCuucGGACUcaccCCUGGUg -3' miRNA: 3'- -UCGu-------GCAGGGCGu--CCUGAu---GGACUAg -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 30742 | 0.67 | 0.680195 |
Target: 5'- cGGCAUGcucaucgagUCCGCGGG-CUccaaggGCCUGGUCa -3' miRNA: 3'- -UCGUGCa--------GGGCGUCCuGA------UGGACUAG- -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 8291 | 0.67 | 0.637304 |
Target: 5'- uGGCGCGgacgCCGCcaAGGACgGCCUGGa- -3' miRNA: 3'- -UCGUGCag--GGCG--UCCUGaUGGACUag -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 14812 | 0.68 | 0.615793 |
Target: 5'- cAGCugG-CCCGUaccgAGGGCguggGCCUGGa- -3' miRNA: 3'- -UCGugCaGGGCG----UCCUGa---UGGACUag -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 45810 | 0.68 | 0.605054 |
Target: 5'- gAGCuc--CCUGCAGGACUccgaacGCCUGAUg -3' miRNA: 3'- -UCGugcaGGGCGUCCUGA------UGGACUAg -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 64827 | 0.7 | 0.50015 |
Target: 5'- gGGCAC--CCCGUGGGACUgguACCUGcgCc -3' miRNA: 3'- -UCGUGcaGGGCGUCCUGA---UGGACuaG- -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 23515 | 0.7 | 0.480066 |
Target: 5'- cGGCACcaaCCCGCAGGACgucauCgUGAUUg -3' miRNA: 3'- -UCGUGca-GGGCGUCCUGau---GgACUAG- -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 25704 | 0.7 | 0.470172 |
Target: 5'- uGUACGugacaUCgCCGCAGGGCUacuACCUGAa- -3' miRNA: 3'- uCGUGC-----AG-GGCGUCCUGA---UGGACUag -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 17309 | 0.76 | 0.220554 |
Target: 5'- cGCGCGUgCCCGCGGGACgcUACaCgcagGAUCa -3' miRNA: 3'- uCGUGCA-GGGCGUCCUG--AUG-Ga---CUAG- -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 47712 | 0.67 | 0.690834 |
Target: 5'- cGC-CGUugCCCGCGGGGCcguCgCUGGUCc -3' miRNA: 3'- uCGuGCA--GGGCGUCCUGau-G-GACUAG- -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 26965 | 0.67 | 0.687647 |
Target: 5'- aGGCGCGagaggCCCGUcagcaugccgauauAGGugUugCUGAUg -3' miRNA: 3'- -UCGUGCa----GGGCG--------------UCCugAugGACUAg -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 39746 | 0.67 | 0.669513 |
Target: 5'- gAGCACGuUCCCGCAcauGGuCcGCgCUGAUg -3' miRNA: 3'- -UCGUGC-AGGGCGU---CCuGaUG-GACUAg -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 5374 | 0.68 | 0.594337 |
Target: 5'- cGCGCGg-CCGCAGGACcACCaUGGc- -3' miRNA: 3'- uCGUGCagGGCGUCCUGaUGG-ACUag -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 72736 | 0.69 | 0.530944 |
Target: 5'- aGGUA-GUCCUGCGGGACgUGCUUGGc- -3' miRNA: 3'- -UCGUgCAGGGCGUCCUG-AUGGACUag -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 39336 | 0.71 | 0.441137 |
Target: 5'- cGGCugGUacuaCCCGUucGGGCUcggauacaacaGCCUGAUCg -3' miRNA: 3'- -UCGugCA----GGGCGu-CCUGA-----------UGGACUAG- -5' |
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18361 | 5' | -56.4 | NC_004681.1 | + | 39016 | 0.71 | 0.404062 |
Target: 5'- cAGcCACGgCCCGCggcgacaaagAGGACUGCCUaGUCa -3' miRNA: 3'- -UC-GUGCaGGGCG----------UCCUGAUGGAcUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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