miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18362 5' -64.5 NC_004681.1 + 58027 0.66 0.382251
Target:  5'- cGGCCgCCGCGUUGAUgucggCCUGCG-UGGGc -3'
miRNA:   3'- aCCGG-GGUGCGGUUG-----GGGCGCgACCC- -5'
18362 5' -64.5 NC_004681.1 + 53562 0.66 0.382251
Target:  5'- gGGCgCCCACGCCG-CCaCGCGgaGuGa -3'
miRNA:   3'- aCCG-GGGUGCGGUuGGgGCGCgaC-Cc -5'
18362 5' -64.5 NC_004681.1 + 33993 0.66 0.382251
Target:  5'- cGGCUCCGCGgaGAUcggCCCGCuGCaGGGa -3'
miRNA:   3'- aCCGGGGUGCggUUG---GGGCG-CGaCCC- -5'
18362 5' -64.5 NC_004681.1 + 9641 0.66 0.382251
Target:  5'- gGGUCCUugcaGCGCCacaucugguacAugCCCGCGgUGGu -3'
miRNA:   3'- aCCGGGG----UGCGG-----------UugGGGCGCgACCc -5'
18362 5' -64.5 NC_004681.1 + 60181 0.66 0.382251
Target:  5'- uUGGCgUCUGCGUgAGCCUCGCGCgcGGu -3'
miRNA:   3'- -ACCG-GGGUGCGgUUGGGGCGCGa-CCc -5'
18362 5' -64.5 NC_004681.1 + 39703 0.66 0.382251
Target:  5'- aUGGCCCUuccguaGCCAcCUCCGguuCGCcGGGg -3'
miRNA:   3'- -ACCGGGGug----CGGUuGGGGC---GCGaCCC- -5'
18362 5' -64.5 NC_004681.1 + 60540 0.66 0.382251
Target:  5'- gGGCCgaaggguagUCACGCCGcacGCCUCGggcCGCUGGc -3'
miRNA:   3'- aCCGG---------GGUGCGGU---UGGGGC---GCGACCc -5'
18362 5' -64.5 NC_004681.1 + 7331 0.66 0.374126
Target:  5'- cGGCaCCCgGgGCUGACCCCGcCGCcGcGGc -3'
miRNA:   3'- aCCG-GGG-UgCGGUUGGGGC-GCGaC-CC- -5'
18362 5' -64.5 NC_004681.1 + 48870 0.66 0.374126
Target:  5'- -cGCCUCcC-CCGuUCCCGCGUUGGGa -3'
miRNA:   3'- acCGGGGuGcGGUuGGGGCGCGACCC- -5'
18362 5' -64.5 NC_004681.1 + 6328 0.66 0.366119
Target:  5'- aGGCCgacgaguugUACGCgAACUCCGCGCUGc- -3'
miRNA:   3'- aCCGGg--------GUGCGgUUGGGGCGCGACcc -5'
18362 5' -64.5 NC_004681.1 + 31398 0.66 0.35823
Target:  5'- aGaCCCCA-GCCAGCCa--CGCUGGGc -3'
miRNA:   3'- aCcGGGGUgCGGUUGGggcGCGACCC- -5'
18362 5' -64.5 NC_004681.1 + 9210 0.66 0.35823
Target:  5'- aGaCCCCgaACGCUguggugaugAACCCgCGCGaCUGGGa -3'
miRNA:   3'- aCcGGGG--UGCGG---------UUGGG-GCGC-GACCC- -5'
18362 5' -64.5 NC_004681.1 + 36588 0.66 0.35823
Target:  5'- cGGCCCUugGCGCCcuuGCCgCgGCGCacGGu -3'
miRNA:   3'- aCCGGGG--UGCGGu--UGG-GgCGCGacCC- -5'
18362 5' -64.5 NC_004681.1 + 18191 0.66 0.35823
Target:  5'- cGGUCCUggaGCGCCu-CCCgGCGCacccccGGGu -3'
miRNA:   3'- aCCGGGG---UGCGGuuGGGgCGCGa-----CCC- -5'
18362 5' -64.5 NC_004681.1 + 64196 0.66 0.35823
Target:  5'- -aGUgCCACGCCAACUucguCCGCaugguCUGGGg -3'
miRNA:   3'- acCGgGGUGCGGUUGG----GGCGc----GACCC- -5'
18362 5' -64.5 NC_004681.1 + 12835 0.66 0.350462
Target:  5'- uUGGCgCCgguACGuCCAG-CCUGCaGCUGGGu -3'
miRNA:   3'- -ACCGgGG---UGC-GGUUgGGGCG-CGACCC- -5'
18362 5' -64.5 NC_004681.1 + 36500 0.66 0.342814
Target:  5'- cGGCCCCucggaGCCGugUCCaGCGC-GGc -3'
miRNA:   3'- aCCGGGGug---CGGUugGGG-CGCGaCCc -5'
18362 5' -64.5 NC_004681.1 + 50268 0.66 0.342814
Target:  5'- cUGGUCCCGCGCCcACCgCaaGaaGGGc -3'
miRNA:   3'- -ACCGGGGUGCGGuUGGgGcgCgaCCC- -5'
18362 5' -64.5 NC_004681.1 + 12191 0.66 0.342814
Target:  5'- cGGaCCCgGCGUCGGgcuuCCCCGCGCg--- -3'
miRNA:   3'- aCC-GGGgUGCGGUU----GGGGCGCGaccc -5'
18362 5' -64.5 NC_004681.1 + 50991 0.66 0.335287
Target:  5'- cGGCcgccgCCCGCGCCGccgacGCCgaugaggucgaCCGCGUUGGc -3'
miRNA:   3'- aCCG-----GGGUGCGGU-----UGG-----------GGCGCGACCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.