miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18362 5' -64.5 NC_004681.1 + 42008 0.67 0.327882
Target:  5'- cGGCCagccuuguCgACGCCAACCUCGUGCg--- -3'
miRNA:   3'- aCCGG--------GgUGCGGUUGGGGCGCGaccc -5'
18362 5' -64.5 NC_004681.1 + 24788 0.67 0.327148
Target:  5'- cUGGCgCCACGgaaauucCCAugCCCGCa-UGGGc -3'
miRNA:   3'- -ACCGgGGUGC-------GGUugGGGCGcgACCC- -5'
18362 5' -64.5 NC_004681.1 + 9349 0.67 0.319877
Target:  5'- gGGCguCCCGguUGUCAccACCCCGCugaucccGCUGGGc -3'
miRNA:   3'- aCCG--GGGU--GCGGU--UGGGGCG-------CGACCC- -5'
18362 5' -64.5 NC_004681.1 + 10213 0.67 0.306396
Target:  5'- cGGCCacaCCugGCCcuggcuCCCCGguuCGCUGcGGg -3'
miRNA:   3'- aCCGG---GGugCGGuu----GGGGC---GCGAC-CC- -5'
18362 5' -64.5 NC_004681.1 + 52768 0.67 0.299478
Target:  5'- cUGGUCCUGCGCgCGAUUgCGgGCgGGGa -3'
miRNA:   3'- -ACCGGGGUGCG-GUUGGgGCgCGaCCC- -5'
18362 5' -64.5 NC_004681.1 + 26736 0.67 0.299478
Target:  5'- -cGCCCCG-GCCAACCUCG-GCUacaaGGGc -3'
miRNA:   3'- acCGGGGUgCGGUUGGGGCgCGA----CCC- -5'
18362 5' -64.5 NC_004681.1 + 67346 0.67 0.292681
Target:  5'- aGGCgCCCAUcaGCuCAGCCgcagCCGUGCcGGGg -3'
miRNA:   3'- aCCG-GGGUG--CG-GUUGG----GGCGCGaCCC- -5'
18362 5' -64.5 NC_004681.1 + 48708 0.68 0.279451
Target:  5'- cGGCuucgagucgCCCGCgGUCAACgagCUGCGCUGGGu -3'
miRNA:   3'- aCCG---------GGGUG-CGGUUGg--GGCGCGACCC- -5'
18362 5' -64.5 NC_004681.1 + 15211 0.68 0.279451
Target:  5'- aGGaCCCCAaCGUCGGCCC---GCUGGGc -3'
miRNA:   3'- aCC-GGGGU-GCGGUUGGGgcgCGACCC- -5'
18362 5' -64.5 NC_004681.1 + 45573 0.68 0.279451
Target:  5'- gUGGUCUCgACGCCGuaccgGCCgCCGCcGCUGuGGc -3'
miRNA:   3'- -ACCGGGG-UGCGGU-----UGG-GGCG-CGAC-CC- -5'
18362 5' -64.5 NC_004681.1 + 26217 0.68 0.273016
Target:  5'- cUGGCCCgCcacggcggcgAUGCCcGCCCCcuacGCGgUGGGg -3'
miRNA:   3'- -ACCGGG-G----------UGCGGuUGGGG----CGCgACCC- -5'
18362 5' -64.5 NC_004681.1 + 73643 0.68 0.273016
Target:  5'- aGGCgaaugucgucuCCCGCGCacugcGCCgCGaCGCUGGGa -3'
miRNA:   3'- aCCG-----------GGGUGCGgu---UGGgGC-GCGACCC- -5'
18362 5' -64.5 NC_004681.1 + 39296 0.68 0.264829
Target:  5'- cGGCCaCCaucgacaaauaccuGCGCgcgCGGCgCCGCGCUGGa -3'
miRNA:   3'- aCCGG-GG--------------UGCG---GUUGgGGCGCGACCc -5'
18362 5' -64.5 NC_004681.1 + 68489 0.68 0.260503
Target:  5'- aGGCUUCGCcgcggcggcgggGUCAGCCCCGgGUgccgGGGg -3'
miRNA:   3'- aCCGGGGUG------------CGGUUGGGGCgCGa---CCC- -5'
18362 5' -64.5 NC_004681.1 + 32134 0.68 0.260503
Target:  5'- cGGCggCCCACGCCAACgaCCa-GCUGGa -3'
miRNA:   3'- aCCG--GGGUGCGGUUGg-GGcgCGACCc -5'
18362 5' -64.5 NC_004681.1 + 51816 0.68 0.254424
Target:  5'- aUGGUagCCGCGCCGAaccaCCCGaggauguugGCUGGGu -3'
miRNA:   3'- -ACCGg-GGUGCGGUUg---GGGCg--------CGACCC- -5'
18362 5' -64.5 NC_004681.1 + 39421 0.68 0.254424
Target:  5'- cGGUaaCCCGCGCaAAagCCGCGCUGGa -3'
miRNA:   3'- aCCG--GGGUGCGgUUggGGCGCGACCc -5'
18362 5' -64.5 NC_004681.1 + 67255 0.68 0.254424
Target:  5'- cUGGCCCCgccgcaccgcaACGCCGAguuCUCCGuCGUguacgGGGa -3'
miRNA:   3'- -ACCGGGG-----------UGCGGUU---GGGGC-GCGa----CCC- -5'
18362 5' -64.5 NC_004681.1 + 58503 0.68 0.253223
Target:  5'- aGGUCgCCGCGCUGAUCCUGCGUguagcgucccgcGGGc -3'
miRNA:   3'- aCCGG-GGUGCGGUUGGGGCGCGa-----------CCC- -5'
18362 5' -64.5 NC_004681.1 + 61074 0.68 0.248462
Target:  5'- cGGCaCgCugacCGCCGACCCCGaGCUGcGGu -3'
miRNA:   3'- aCCG-GgGu---GCGGUUGGGGCgCGAC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.