miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18362 5' -64.5 NC_004681.1 + 3409 0.71 0.163861
Target:  5'- cGGCgCCCGCGCgAGCCaCGCGCgcacGGa -3'
miRNA:   3'- aCCG-GGGUGCGgUUGGgGCGCGa---CCc -5'
18362 5' -64.5 NC_004681.1 + 4072 1.08 0.000237
Target:  5'- cUGGCCCCACGCCAACCCCGCGCUGGGu -3'
miRNA:   3'- -ACCGGGGUGCGGUUGGGGCGCGACCC- -5'
18362 5' -64.5 NC_004681.1 + 4580 0.69 0.239164
Target:  5'- gGGCaauuuCCACGCUGGCUCCGUGUgcguggacugccucaUGGGa -3'
miRNA:   3'- aCCGg----GGUGCGGUUGGGGCGCG---------------ACCC- -5'
18362 5' -64.5 NC_004681.1 + 6328 0.66 0.366119
Target:  5'- aGGCCgacgaguugUACGCgAACUCCGCGCUGc- -3'
miRNA:   3'- aCCGGg--------GUGCGgUUGGGGCGCGACcc -5'
18362 5' -64.5 NC_004681.1 + 7331 0.66 0.374126
Target:  5'- cGGCaCCCgGgGCUGACCCCGcCGCcGcGGc -3'
miRNA:   3'- aCCG-GGG-UgCGGUUGGGGC-GCGaC-CC- -5'
18362 5' -64.5 NC_004681.1 + 9210 0.66 0.35823
Target:  5'- aGaCCCCgaACGCUguggugaugAACCCgCGCGaCUGGGa -3'
miRNA:   3'- aCcGGGG--UGCGG---------UUGGG-GCGC-GACCC- -5'
18362 5' -64.5 NC_004681.1 + 9349 0.67 0.319877
Target:  5'- gGGCguCCCGguUGUCAccACCCCGCugaucccGCUGGGc -3'
miRNA:   3'- aCCG--GGGU--GCGGU--UGGGGCG-------CGACCC- -5'
18362 5' -64.5 NC_004681.1 + 9641 0.66 0.382251
Target:  5'- gGGUCCUugcaGCGCCacaucugguacAugCCCGCGgUGGu -3'
miRNA:   3'- aCCGGGG----UGCGG-----------UugGGGCGCgACCc -5'
18362 5' -64.5 NC_004681.1 + 10213 0.67 0.306396
Target:  5'- cGGCCacaCCugGCCcuggcuCCCCGguuCGCUGcGGg -3'
miRNA:   3'- aCCGG---GGugCGGuu----GGGGC---GCGAC-CC- -5'
18362 5' -64.5 NC_004681.1 + 12191 0.66 0.342814
Target:  5'- cGGaCCCgGCGUCGGgcuuCCCCGCGCg--- -3'
miRNA:   3'- aCC-GGGgUGCGGUU----GGGGCGCGaccc -5'
18362 5' -64.5 NC_004681.1 + 12835 0.66 0.350462
Target:  5'- uUGGCgCCgguACGuCCAG-CCUGCaGCUGGGu -3'
miRNA:   3'- -ACCGgGG---UGC-GGUUgGGGCG-CGACCC- -5'
18362 5' -64.5 NC_004681.1 + 15211 0.68 0.279451
Target:  5'- aGGaCCCCAaCGUCGGCCC---GCUGGGc -3'
miRNA:   3'- aCC-GGGGU-GCGGUUGGGgcgCGACCC- -5'
18362 5' -64.5 NC_004681.1 + 15987 0.69 0.236885
Target:  5'- cGGUCCagAUGCUGGCCuCCGCGUaucUGGGc -3'
miRNA:   3'- aCCGGGg-UGCGGUUGG-GGCGCG---ACCC- -5'
18362 5' -64.5 NC_004681.1 + 17950 0.72 0.144413
Target:  5'- -cGCUCCACGUCGugaGCUCCGCGCUuGGa -3'
miRNA:   3'- acCGGGGUGCGGU---UGGGGCGCGAcCC- -5'
18362 5' -64.5 NC_004681.1 + 18191 0.66 0.35823
Target:  5'- cGGUCCUggaGCGCCu-CCCgGCGCacccccGGGu -3'
miRNA:   3'- aCCGGGG---UGCGGuuGGGgCGCGa-----CCC- -5'
18362 5' -64.5 NC_004681.1 + 24788 0.67 0.327148
Target:  5'- cUGGCgCCACGgaaauucCCAugCCCGCa-UGGGc -3'
miRNA:   3'- -ACCGgGGUGC-------GGUugGGGCGcgACCC- -5'
18362 5' -64.5 NC_004681.1 + 25180 0.73 0.123871
Target:  5'- gUGGCCCCG-GUCAgGCCCCuggcgGCGCUGGc -3'
miRNA:   3'- -ACCGGGGUgCGGU-UGGGG-----CGCGACCc -5'
18362 5' -64.5 NC_004681.1 + 26217 0.68 0.273016
Target:  5'- cUGGCCCgCcacggcggcgAUGCCcGCCCCcuacGCGgUGGGg -3'
miRNA:   3'- -ACCGGG-G----------UGCGGuUGGGG----CGCgACCC- -5'
18362 5' -64.5 NC_004681.1 + 26332 0.71 0.159791
Target:  5'- aUGGCCUgguUGCGCagGACCCCGgCGaCUGGGc -3'
miRNA:   3'- -ACCGGG---GUGCGg-UUGGGGC-GC-GACCC- -5'
18362 5' -64.5 NC_004681.1 + 26736 0.67 0.299478
Target:  5'- -cGCCCCG-GCCAACCUCG-GCUacaaGGGc -3'
miRNA:   3'- acCGGGGUgCGGUUGGGGCgCGA----CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.