miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18362 5' -64.5 NC_004681.1 + 24788 0.67 0.327148
Target:  5'- cUGGCgCCACGgaaauucCCAugCCCGCa-UGGGc -3'
miRNA:   3'- -ACCGgGGUGC-------GGUugGGGCGcgACCC- -5'
18362 5' -64.5 NC_004681.1 + 32134 0.68 0.260503
Target:  5'- cGGCggCCCACGCCAACgaCCa-GCUGGa -3'
miRNA:   3'- aCCG--GGGUGCGGUUGg-GGcgCGACCc -5'
18362 5' -64.5 NC_004681.1 + 39296 0.68 0.264829
Target:  5'- cGGCCaCCaucgacaaauaccuGCGCgcgCGGCgCCGCGCUGGa -3'
miRNA:   3'- aCCGG-GG--------------UGCG---GUUGgGGCGCGACCc -5'
18362 5' -64.5 NC_004681.1 + 26217 0.68 0.273016
Target:  5'- cUGGCCCgCcacggcggcgAUGCCcGCCCCcuacGCGgUGGGg -3'
miRNA:   3'- -ACCGGG-G----------UGCGGuUGGGG----CGCgACCC- -5'
18362 5' -64.5 NC_004681.1 + 15211 0.68 0.279451
Target:  5'- aGGaCCCCAaCGUCGGCCC---GCUGGGc -3'
miRNA:   3'- aCC-GGGGU-GCGGUUGGGgcgCGACCC- -5'
18362 5' -64.5 NC_004681.1 + 48708 0.68 0.279451
Target:  5'- cGGCuucgagucgCCCGCgGUCAACgagCUGCGCUGGGu -3'
miRNA:   3'- aCCG---------GGGUG-CGGUUGg--GGCGCGACCC- -5'
18362 5' -64.5 NC_004681.1 + 26736 0.67 0.299478
Target:  5'- -cGCCCCG-GCCAACCUCG-GCUacaaGGGc -3'
miRNA:   3'- acCGGGGUgCGGUUGGGGCgCGA----CCC- -5'
18362 5' -64.5 NC_004681.1 + 10213 0.67 0.306396
Target:  5'- cGGCCacaCCugGCCcuggcuCCCCGguuCGCUGcGGg -3'
miRNA:   3'- aCCGG---GGugCGGuu----GGGGC---GCGAC-CC- -5'
18362 5' -64.5 NC_004681.1 + 9349 0.67 0.319877
Target:  5'- gGGCguCCCGguUGUCAccACCCCGCugaucccGCUGGGc -3'
miRNA:   3'- aCCG--GGGU--GCGGU--UGGGGCG-------CGACCC- -5'
18362 5' -64.5 NC_004681.1 + 67255 0.68 0.254424
Target:  5'- cUGGCCCCgccgcaccgcaACGCCGAguuCUCCGuCGUguacgGGGa -3'
miRNA:   3'- -ACCGGGG-----------UGCGGUU---GGGGC-GCGa----CCC- -5'
18362 5' -64.5 NC_004681.1 + 61074 0.68 0.248462
Target:  5'- cGGCaCgCugacCGCCGACCCCGaGCUGcGGu -3'
miRNA:   3'- aCCG-GgGu---GCGGUUGGGGCgCGAC-CC- -5'
18362 5' -64.5 NC_004681.1 + 15987 0.69 0.236885
Target:  5'- cGGUCCagAUGCUGGCCuCCGCGUaucUGGGc -3'
miRNA:   3'- aCCGGGg-UGCGGUUGG-GGCGCG---ACCC- -5'
18362 5' -64.5 NC_004681.1 + 25180 0.73 0.123871
Target:  5'- gUGGCCCCG-GUCAgGCCCCuggcgGCGCUGGc -3'
miRNA:   3'- -ACCGGGGUgCGGU-UGGGG-----CGCGACCc -5'
18362 5' -64.5 NC_004681.1 + 36781 0.72 0.144413
Target:  5'- aGGCCgCugGCCcGCCCCcCGCUGa- -3'
miRNA:   3'- aCCGGgGugCGGuUGGGGcGCGACcc -5'
18362 5' -64.5 NC_004681.1 + 3409 0.71 0.163861
Target:  5'- cGGCgCCCGCGCgAGCCaCGCGCgcacGGa -3'
miRNA:   3'- aCCG-GGGUGCGgUUGGgGCGCGa---CCc -5'
18362 5' -64.5 NC_004681.1 + 59683 0.7 0.185631
Target:  5'- aUGGCa--GCGCCGccacGCCCCcUGCUGGGa -3'
miRNA:   3'- -ACCGgggUGCGGU----UGGGGcGCGACCC- -5'
18362 5' -64.5 NC_004681.1 + 34513 0.7 0.192169
Target:  5'- aUGGUCCCAUGCCuauccugaaaacucgGGCgCCGCGgUGGc -3'
miRNA:   3'- -ACCGGGGUGCGG---------------UUGgGGCGCgACCc -5'
18362 5' -64.5 NC_004681.1 + 58632 0.7 0.195033
Target:  5'- cGGCCCCucaagguguccuGCGCCAcgGCCgCCuGCGCcgcGGGc -3'
miRNA:   3'- aCCGGGG------------UGCGGU--UGG-GG-CGCGa--CCC- -5'
18362 5' -64.5 NC_004681.1 + 59361 0.69 0.225763
Target:  5'- cUGGCCCCAC-CCucuGCUCCcgauGCGCUGa- -3'
miRNA:   3'- -ACCGGGGUGcGGu--UGGGG----CGCGACcc -5'
18362 5' -64.5 NC_004681.1 + 43576 0.69 0.231268
Target:  5'- aGGUCCUAcugacCGCCuACCUCGCGCUaacccccgaGGGu -3'
miRNA:   3'- aCCGGGGU-----GCGGuUGGGGCGCGA---------CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.