miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18364 3' -51.2 NC_004681.1 + 44968 0.66 0.947627
Target:  5'- gGGCUcCAG-CGGgucgGCg--GGCGGCg -3'
miRNA:   3'- gCCGA-GUCaGCUaaa-CGaaaCCGCUG- -5'
18364 3' -51.2 NC_004681.1 + 52706 0.66 0.942808
Target:  5'- uGGCUCAGgaug---GCUUUGGgGAg -3'
miRNA:   3'- gCCGAGUCagcuaaaCGAAACCgCUg -5'
18364 3' -51.2 NC_004681.1 + 30655 0.66 0.942808
Target:  5'- uGGCgCGGUCGAUgaaagacUGCaccUGcGCGACg -3'
miRNA:   3'- gCCGaGUCAGCUAa------ACGaa-AC-CGCUG- -5'
18364 3' -51.2 NC_004681.1 + 35245 0.66 0.941308
Target:  5'- aGGCUUAgcuguaauucucauGUCGccGUUUGCcucGGCGACg -3'
miRNA:   3'- gCCGAGU--------------CAGC--UAAACGaaaCCGCUG- -5'
18364 3' -51.2 NC_004681.1 + 51633 0.67 0.920718
Target:  5'- aGGCcgCGGUUGAUcgGCUUguUGGUGcGCa -3'
miRNA:   3'- gCCGa-GUCAGCUAaaCGAA--ACCGC-UG- -5'
18364 3' -51.2 NC_004681.1 + 62774 0.68 0.886778
Target:  5'- uCGaGCUCGG-CGAUgcgaGCUUccagcuuggcgaUGGCGGCg -3'
miRNA:   3'- -GC-CGAGUCaGCUAaa--CGAA------------ACCGCUG- -5'
18364 3' -51.2 NC_004681.1 + 919 0.69 0.819041
Target:  5'- gGGCUCcguGUCGuc-UGCUUUGGUcACg -3'
miRNA:   3'- gCCGAGu--CAGCuaaACGAAACCGcUG- -5'
18364 3' -51.2 NC_004681.1 + 70247 0.7 0.799906
Target:  5'- gCGGC-CAGuUCGAcugUUGCgcuugaUGGCGACc -3'
miRNA:   3'- -GCCGaGUC-AGCUa--AACGaa----ACCGCUG- -5'
18364 3' -51.2 NC_004681.1 + 12242 0.71 0.71709
Target:  5'- gGGCUgAGUCGGguggcccggUGCUgUGGcCGACu -3'
miRNA:   3'- gCCGAgUCAGCUaa-------ACGAaACC-GCUG- -5'
18364 3' -51.2 NC_004681.1 + 7593 0.72 0.695287
Target:  5'- aCGGCgUAGUCGAUgaGaccgUGGCGGCg -3'
miRNA:   3'- -GCCGaGUCAGCUAaaCgaa-ACCGCUG- -5'
18364 3' -51.2 NC_004681.1 + 16121 0.74 0.540471
Target:  5'- aCGGCUguGUCGGguaucgGCUUcgcggcgcUGGCGGCc -3'
miRNA:   3'- -GCCGAguCAGCUaaa---CGAA--------ACCGCUG- -5'
18364 3' -51.2 NC_004681.1 + 28048 0.77 0.389553
Target:  5'- uGGCgcuggCGGUCGAg--GCggUGGCGGCa -3'
miRNA:   3'- gCCGa----GUCAGCUaaaCGaaACCGCUG- -5'
18364 3' -51.2 NC_004681.1 + 4374 1.12 0.00231
Target:  5'- aCGGCUCAGUCGAUUUGCUUUGGCGACa -3'
miRNA:   3'- -GCCGAGUCAGCUAAACGAAACCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.