miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18364 5' -55.3 NC_004681.1 + 57084 0.66 0.798674
Target:  5'- -cGUCUGCCUccGCCAGGacGGACUa -3'
miRNA:   3'- cuCAGACGGGauCGGUUUgaCCUGGc -5'
18364 5' -55.3 NC_004681.1 + 14784 0.66 0.79772
Target:  5'- -----cGCCCUGGCCAuccugaaGGCUGGcGCCc -3'
miRNA:   3'- cucagaCGGGAUCGGU-------UUGACC-UGGc -5'
18364 5' -55.3 NC_004681.1 + 11310 0.66 0.789059
Target:  5'- cGGGUCUGCCCauggGGgCAGGgUGuucgucagguGACCGg -3'
miRNA:   3'- -CUCAGACGGGa---UCgGUUUgAC----------CUGGC- -5'
18364 5' -55.3 NC_004681.1 + 29472 0.66 0.779285
Target:  5'- cGGGUCcgGUCCaccuCCAGACUgGGGCCGa -3'
miRNA:   3'- -CUCAGa-CGGGauc-GGUUUGA-CCUGGC- -5'
18364 5' -55.3 NC_004681.1 + 45949 0.66 0.779285
Target:  5'- aAGUCaaGCCCU-GCUAGACUGcgaucuguGACCGa -3'
miRNA:   3'- cUCAGa-CGGGAuCGGUUUGAC--------CUGGC- -5'
18364 5' -55.3 NC_004681.1 + 56464 0.66 0.779285
Target:  5'- -cGUC-GCCCaGGCCGGugUGGucgacCCGg -3'
miRNA:   3'- cuCAGaCGGGaUCGGUUugACCu----GGC- -5'
18364 5' -55.3 NC_004681.1 + 70192 0.66 0.779285
Target:  5'- -uGUCUGCCCUu-CCAcguCUGGcCCGu -3'
miRNA:   3'- cuCAGACGGGAucGGUuu-GACCuGGC- -5'
18364 5' -55.3 NC_004681.1 + 66927 0.66 0.769363
Target:  5'- gGGGUacccGCCgCcAGCCAggAGCUGGACCu -3'
miRNA:   3'- -CUCAga--CGG-GaUCGGU--UUGACCUGGc -5'
18364 5' -55.3 NC_004681.1 + 50951 0.66 0.768363
Target:  5'- gGGGUCgccGCCCUcGCCAuuGCUGGugagggaGCCu -3'
miRNA:   3'- -CUCAGa--CGGGAuCGGUu-UGACC-------UGGc -5'
18364 5' -55.3 NC_004681.1 + 52835 0.66 0.759302
Target:  5'- uGGUUUGCCCUgAGCUuccgggcggaAGGCUGG-CCa -3'
miRNA:   3'- cUCAGACGGGA-UCGG----------UUUGACCuGGc -5'
18364 5' -55.3 NC_004681.1 + 54624 0.66 0.759302
Target:  5'- aGGGUCUGCUCc-GCCAGAgUGGcgacGCUGu -3'
miRNA:   3'- -CUCAGACGGGauCGGUUUgACC----UGGC- -5'
18364 5' -55.3 NC_004681.1 + 54572 0.66 0.759302
Target:  5'- gGGGUC-GCCagggAGCCAcaGGCUGG-CCGu -3'
miRNA:   3'- -CUCAGaCGGga--UCGGU--UUGACCuGGC- -5'
18364 5' -55.3 NC_004681.1 + 36773 0.67 0.717902
Target:  5'- -cGUCUGCCa-GGCC--GCUGGcCCGc -3'
miRNA:   3'- cuCAGACGGgaUCGGuuUGACCuGGC- -5'
18364 5' -55.3 NC_004681.1 + 39032 0.67 0.717902
Target:  5'- uGGUgcGCCCac-CCAAGCUGGACCa -3'
miRNA:   3'- cUCAgaCGGGaucGGUUUGACCUGGc -5'
18364 5' -55.3 NC_004681.1 + 32125 0.67 0.717902
Target:  5'- cGGUCaccgcggcgGCCCacGCCAAcgaccaGCUGGACCGc -3'
miRNA:   3'- cUCAGa--------CGGGauCGGUU------UGACCUGGC- -5'
18364 5' -55.3 NC_004681.1 + 10409 0.67 0.685944
Target:  5'- aAGgCUGaCCaGGCCAuuCUGGACCGc -3'
miRNA:   3'- cUCaGACgGGaUCGGUuuGACCUGGC- -5'
18364 5' -55.3 NC_004681.1 + 45080 0.68 0.652448
Target:  5'- cGGUCgagGCCCUcGCCGcggucucgcucaaGACcgGGGCCGa -3'
miRNA:   3'- cUCAGa--CGGGAuCGGU-------------UUGa-CCUGGC- -5'
18364 5' -55.3 NC_004681.1 + 475 0.69 0.614433
Target:  5'- uGGGgagGCgCCUGGCCGAgaugcugggcgucaaGCUGGACCc -3'
miRNA:   3'- -CUCagaCG-GGAUCGGUU---------------UGACCUGGc -5'
18364 5' -55.3 NC_004681.1 + 57807 0.71 0.453775
Target:  5'- uGAGgcgUUGCCCgAGCCGuACUGGcCCGu -3'
miRNA:   3'- -CUCa--GACGGGaUCGGUuUGACCuGGC- -5'
18364 5' -55.3 NC_004681.1 + 69256 0.73 0.397405
Target:  5'- uGGGUCUGUCCgacaccugaugGGCCGAucugaUGGACCGc -3'
miRNA:   3'- -CUCAGACGGGa----------UCGGUUug---ACCUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.