miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18365 5' -54.2 NC_004681.1 + 4594 0.66 0.860681
Target:  5'- --cUGGCuccGUGUGCGUGGAcuGCCu -3'
miRNA:   3'- uaaGCCGcuaCACGCGCACCUcuUGG- -5'
18365 5' -54.2 NC_004681.1 + 38879 0.66 0.852455
Target:  5'- --cCGGUGAcGgccGcCGCGUGGAGucGCCu -3'
miRNA:   3'- uaaGCCGCUaCa--C-GCGCACCUCu-UGG- -5'
18365 5' -54.2 NC_004681.1 + 32083 0.66 0.847411
Target:  5'- uUUCGGCGGUGacucaggugguggaaUGaGCGUGcGAGuucACCg -3'
miRNA:   3'- uAAGCCGCUAC---------------ACgCGCAC-CUCu--UGG- -5'
18365 5' -54.2 NC_004681.1 + 34775 0.66 0.844004
Target:  5'- -aUCGGCGgcG-GCGCcgaaGAGGGCCg -3'
miRNA:   3'- uaAGCCGCuaCaCGCGcac-CUCUUGG- -5'
18365 5' -54.2 NC_004681.1 + 44116 0.66 0.844004
Target:  5'- cUUCGGacagGaGCGCGaUGGAGGGCUg -3'
miRNA:   3'- uAAGCCgcuaCaCGCGC-ACCUCUUGG- -5'
18365 5' -54.2 NC_004681.1 + 57842 0.66 0.835336
Target:  5'- --cCGG-GGUGUGCGUGaucagcgGGAGuGGCCg -3'
miRNA:   3'- uaaGCCgCUACACGCGCa------CCUC-UUGG- -5'
18365 5' -54.2 NC_004681.1 + 64899 0.67 0.808119
Target:  5'- --gCGG-GA-GUGCGgGUGGGGAAUg -3'
miRNA:   3'- uaaGCCgCUaCACGCgCACCUCUUGg -5'
18365 5' -54.2 NC_004681.1 + 13603 0.67 0.798674
Target:  5'- -cUUGGCGAUGcGCGCGcacaggUGGcGGuACCa -3'
miRNA:   3'- uaAGCCGCUACaCGCGC------ACC-UCuUGG- -5'
18365 5' -54.2 NC_004681.1 + 8402 0.67 0.798674
Target:  5'- -gUCGGUGAUGUcCGgGuUGGccuuGAGCCa -3'
miRNA:   3'- uaAGCCGCUACAcGCgC-ACCu---CUUGG- -5'
18365 5' -54.2 NC_004681.1 + 55315 0.68 0.759302
Target:  5'- -gUCuGCGcgGaggcGUGCGUGGAGAuuuGCCg -3'
miRNA:   3'- uaAGcCGCuaCa---CGCGCACCUCU---UGG- -5'
18365 5' -54.2 NC_004681.1 + 59735 0.68 0.749115
Target:  5'- --gUGGCGGcUGUGCGCGccgcggUGGuGAcGCCa -3'
miRNA:   3'- uaaGCCGCU-ACACGCGC------ACCuCU-UGG- -5'
18365 5' -54.2 NC_004681.1 + 18038 0.68 0.738812
Target:  5'- -cUCGGCGgcGcgGCGCGUGGucgcGGucuCCg -3'
miRNA:   3'- uaAGCCGCuaCa-CGCGCACCu---CUu--GG- -5'
18365 5' -54.2 NC_004681.1 + 38835 0.68 0.738812
Target:  5'- --aCGGCGGca---GCGUGGAGGGCUa -3'
miRNA:   3'- uaaGCCGCUacacgCGCACCUCUUGG- -5'
18365 5' -54.2 NC_004681.1 + 49197 0.68 0.728404
Target:  5'- aGUUCGGCGAUcUGCGgGaaaaucUGcGAGAACg -3'
miRNA:   3'- -UAAGCCGCUAcACGCgC------AC-CUCUUGg -5'
18365 5' -54.2 NC_004681.1 + 2658 0.68 0.717902
Target:  5'- --cCGG-GAgGUGCGCGgcUGGAGuGCCa -3'
miRNA:   3'- uaaGCCgCUaCACGCGC--ACCUCuUGG- -5'
18365 5' -54.2 NC_004681.1 + 13564 0.69 0.694522
Target:  5'- -cUCGGCGGUGaucuugcccccgGCGCGgUGGAcGAagACCu -3'
miRNA:   3'- uaAGCCGCUACa-----------CGCGC-ACCU-CU--UGG- -5'
18365 5' -54.2 NC_004681.1 + 2304 0.69 0.685944
Target:  5'- --aCGcGCGAuaUGgaGCGCGUGGAGAcGCUg -3'
miRNA:   3'- uaaGC-CGCU--ACa-CGCGCACCUCU-UGG- -5'
18365 5' -54.2 NC_004681.1 + 63627 0.7 0.631813
Target:  5'- --cCGGgGAUGcgGCGCGcGGGGaAGCCc -3'
miRNA:   3'- uaaGCCgCUACa-CGCGCaCCUC-UUGG- -5'
18365 5' -54.2 NC_004681.1 + 2183 0.71 0.566944
Target:  5'- --gCGGCGcaGUGCGCG-GGAGAcgacauucGCCu -3'
miRNA:   3'- uaaGCCGCuaCACGCGCaCCUCU--------UGG- -5'
18365 5' -54.2 NC_004681.1 + 11582 0.76 0.32962
Target:  5'- -cUCGGCGGUGUGCG-GUucGGGGAuuucauGCCa -3'
miRNA:   3'- uaAGCCGCUACACGCgCA--CCUCU------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.