miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18366 5' -51.7 NC_004681.1 + 8578 0.66 0.909366
Target:  5'- cGGCGuUGCGGUgcggcGGGGCcaGCUuGUUCUUg -3'
miRNA:   3'- -CCGU-ACGUCAa----CCUCG--CGGuUAAGAG- -5'
18366 5' -51.7 NC_004681.1 + 59232 0.67 0.895571
Target:  5'- cGGCcUGCAGUUgcaggucgaccGGGGaCGCCGGgggCUUg -3'
miRNA:   3'- -CCGuACGUCAA-----------CCUC-GCGGUUaa-GAG- -5'
18366 5' -51.7 NC_004681.1 + 70014 0.67 0.894852
Target:  5'- aGGCgcuucucGUGCcgcaguaccaGGUUGGGGCGgCCAgcGUUCUUc -3'
miRNA:   3'- -CCG-------UACG----------UCAACCUCGC-GGU--UAAGAG- -5'
18366 5' -51.7 NC_004681.1 + 31654 0.67 0.888259
Target:  5'- cGGUcguUGguGaUUGGGGCGCCGuagcaCUCg -3'
miRNA:   3'- -CCGu--ACguC-AACCUCGCGGUuaa--GAG- -5'
18366 5' -51.7 NC_004681.1 + 61563 0.67 0.880678
Target:  5'- cGCAUGCGGUaguaGGAcuGCGaugcgCGGUUCUCa -3'
miRNA:   3'- cCGUACGUCAa---CCU--CGCg----GUUAAGAG- -5'
18366 5' -51.7 NC_004681.1 + 48866 0.68 0.847779
Target:  5'- cGGCAUGCuGacGGGccucucGCGCCug-UCUCa -3'
miRNA:   3'- -CCGUACGuCaaCCU------CGCGGuuaAGAG- -5'
18366 5' -51.7 NC_004681.1 + 17756 0.68 0.839843
Target:  5'- uGGCcguUGCAGcgcgcuuccacGCGCCAGUUCUCg -3'
miRNA:   3'- -CCGu--ACGUCaaccu------CGCGGUUAAGAG- -5'
18366 5' -51.7 NC_004681.1 + 2743 0.68 0.838949
Target:  5'- aGGCugucgaacUGCAGUcGGAGUGCCAGa---- -3'
miRNA:   3'- -CCGu-------ACGUCAaCCUCGCGGUUaagag -5'
18366 5' -51.7 NC_004681.1 + 55325 0.68 0.820626
Target:  5'- aGGCGUGCG--UGGAGauuuGCCGggUCUUc -3'
miRNA:   3'- -CCGUACGUcaACCUCg---CGGUuaAGAG- -5'
18366 5' -51.7 NC_004681.1 + 25256 0.68 0.820626
Target:  5'- cGGCG-GCGGUUGGGuGCGCU---UCUa -3'
miRNA:   3'- -CCGUaCGUCAACCU-CGCGGuuaAGAg -5'
18366 5' -51.7 NC_004681.1 + 73505 0.71 0.685622
Target:  5'- cGGCAcGCAGaagUGG-GCGCCGAc-CUCg -3'
miRNA:   3'- -CCGUaCGUCa--ACCuCGCGGUUaaGAG- -5'
18366 5' -51.7 NC_004681.1 + 2663 0.74 0.497382
Target:  5'- aGGUgcGCGGcUGGAGUGCCAGUacugcggUCUCc -3'
miRNA:   3'- -CCGuaCGUCaACCUCGCGGUUA-------AGAG- -5'
18366 5' -51.7 NC_004681.1 + 5256 1.13 0.001527
Target:  5'- gGGCAUGCAGUUGGAGCGCCAAUUCUCg -3'
miRNA:   3'- -CCGUACGUCAACCUCGCGGUUAAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.