Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18366 | 5' | -51.7 | NC_004681.1 | + | 5256 | 1.13 | 0.001527 |
Target: 5'- gGGCAUGCAGUUGGAGCGCCAAUUCUCg -3' miRNA: 3'- -CCGUACGUCAACCUCGCGGUUAAGAG- -5' |
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18366 | 5' | -51.7 | NC_004681.1 | + | 2663 | 0.74 | 0.497382 |
Target: 5'- aGGUgcGCGGcUGGAGUGCCAGUacugcggUCUCc -3' miRNA: 3'- -CCGuaCGUCaACCUCGCGGUUA-------AGAG- -5' |
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18366 | 5' | -51.7 | NC_004681.1 | + | 73505 | 0.71 | 0.685622 |
Target: 5'- cGGCAcGCAGaagUGG-GCGCCGAc-CUCg -3' miRNA: 3'- -CCGUaCGUCa--ACCuCGCGGUUaaGAG- -5' |
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18366 | 5' | -51.7 | NC_004681.1 | + | 25256 | 0.68 | 0.820626 |
Target: 5'- cGGCG-GCGGUUGGGuGCGCU---UCUa -3' miRNA: 3'- -CCGUaCGUCAACCU-CGCGGuuaAGAg -5' |
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18366 | 5' | -51.7 | NC_004681.1 | + | 55325 | 0.68 | 0.820626 |
Target: 5'- aGGCGUGCG--UGGAGauuuGCCGggUCUUc -3' miRNA: 3'- -CCGUACGUcaACCUCg---CGGUuaAGAG- -5' |
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18366 | 5' | -51.7 | NC_004681.1 | + | 2743 | 0.68 | 0.838949 |
Target: 5'- aGGCugucgaacUGCAGUcGGAGUGCCAGa---- -3' miRNA: 3'- -CCGu-------ACGUCAaCCUCGCGGUUaagag -5' |
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18366 | 5' | -51.7 | NC_004681.1 | + | 17756 | 0.68 | 0.839843 |
Target: 5'- uGGCcguUGCAGcgcgcuuccacGCGCCAGUUCUCg -3' miRNA: 3'- -CCGu--ACGUCaaccu------CGCGGUUAAGAG- -5' |
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18366 | 5' | -51.7 | NC_004681.1 | + | 48866 | 0.68 | 0.847779 |
Target: 5'- cGGCAUGCuGacGGGccucucGCGCCug-UCUCa -3' miRNA: 3'- -CCGUACGuCaaCCU------CGCGGuuaAGAG- -5' |
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18366 | 5' | -51.7 | NC_004681.1 | + | 61563 | 0.67 | 0.880678 |
Target: 5'- cGCAUGCGGUaguaGGAcuGCGaugcgCGGUUCUCa -3' miRNA: 3'- cCGUACGUCAa---CCU--CGCg----GUUAAGAG- -5' |
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18366 | 5' | -51.7 | NC_004681.1 | + | 31654 | 0.67 | 0.888259 |
Target: 5'- cGGUcguUGguGaUUGGGGCGCCGuagcaCUCg -3' miRNA: 3'- -CCGu--ACguC-AACCUCGCGGUuaa--GAG- -5' |
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18366 | 5' | -51.7 | NC_004681.1 | + | 70014 | 0.67 | 0.894852 |
Target: 5'- aGGCgcuucucGUGCcgcaguaccaGGUUGGGGCGgCCAgcGUUCUUc -3' miRNA: 3'- -CCG-------UACG----------UCAACCUCGC-GGU--UAAGAG- -5' |
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18366 | 5' | -51.7 | NC_004681.1 | + | 59232 | 0.67 | 0.895571 |
Target: 5'- cGGCcUGCAGUUgcaggucgaccGGGGaCGCCGGgggCUUg -3' miRNA: 3'- -CCGuACGUCAA-----------CCUC-GCGGUUaa-GAG- -5' |
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18366 | 5' | -51.7 | NC_004681.1 | + | 8578 | 0.66 | 0.909366 |
Target: 5'- cGGCGuUGCGGUgcggcGGGGCcaGCUuGUUCUUg -3' miRNA: 3'- -CCGU-ACGUCAa----CCUCG--CGGuUAAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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