miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18367 5' -55 NC_004681.1 + 69381 0.66 0.819487
Target:  5'- cGGCACCGAGGCgGGcGGAGacugguccagagaCGcGACAg -3'
miRNA:   3'- aCUGUGGCUCUGgCU-CCUC-------------GUaCUGU- -5'
18367 5' -55 NC_004681.1 + 57183 0.66 0.811243
Target:  5'- cGACACCGAGAgUGcggcuuaacuaGGGGGCG-GAUc -3'
miRNA:   3'- aCUGUGGCUCUgGC-----------UCCUCGUaCUGu -5'
18367 5' -55 NC_004681.1 + 34603 0.66 0.811243
Target:  5'- cGACGCagauCGGGACCGcuGGAGCAcGuACGu -3'
miRNA:   3'- aCUGUG----GCUCUGGCu-CCUCGUaC-UGU- -5'
18367 5' -55 NC_004681.1 + 62587 0.66 0.811243
Target:  5'- -cGCGCCGAGGCgGAGaAGCAggaGAUg -3'
miRNA:   3'- acUGUGGCUCUGgCUCcUCGUa--CUGu -5'
18367 5' -55 NC_004681.1 + 39638 0.66 0.811243
Target:  5'- gGugGCCGAGGuuGAGcGGCugcgGGCGc -3'
miRNA:   3'- aCugUGGCUCUggCUCcUCGua--CUGU- -5'
18367 5' -55 NC_004681.1 + 2700 0.66 0.810318
Target:  5'- -uACGCUGAGGCUGAGGcugucgaGGCGgaGGCAg -3'
miRNA:   3'- acUGUGGCUCUGGCUCC-------UCGUa-CUGU- -5'
18367 5' -55 NC_004681.1 + 24800 0.66 0.801911
Target:  5'- --uCGCCGucGCCGAGG-GCgAUGACGc -3'
miRNA:   3'- acuGUGGCucUGGCUCCuCG-UACUGU- -5'
18367 5' -55 NC_004681.1 + 7902 0.66 0.801911
Target:  5'- cGcCuCCGAGgaagccGCCGAGGAGCcgGAa- -3'
miRNA:   3'- aCuGuGGCUC------UGGCUCCUCGuaCUgu -5'
18367 5' -55 NC_004681.1 + 46981 0.66 0.792408
Target:  5'- cGAUACCGAGAaggucuCCGuGGAGCccGUGccuGCGc -3'
miRNA:   3'- aCUGUGGCUCU------GGCuCCUCG--UAC---UGU- -5'
18367 5' -55 NC_004681.1 + 66294 0.66 0.792408
Target:  5'- gGAUcaGCUGgaAGGCCGAGGGGCGguACAc -3'
miRNA:   3'- aCUG--UGGC--UCUGGCUCCUCGUacUGU- -5'
18367 5' -55 NC_004681.1 + 1489 0.66 0.782744
Target:  5'- -aGCGCUGAGAgUGAGGAcugagGCAaUGGCAu -3'
miRNA:   3'- acUGUGGCUCUgGCUCCU-----CGU-ACUGU- -5'
18367 5' -55 NC_004681.1 + 50743 0.66 0.782744
Target:  5'- cGGCcaACCGAGguGCCGAGGAGgcUGAg- -3'
miRNA:   3'- aCUG--UGGCUC--UGGCUCCUCguACUgu -5'
18367 5' -55 NC_004681.1 + 4560 0.67 0.772929
Target:  5'- -uACGCUGAGGCacuGGAGUcgGGCAa -3'
miRNA:   3'- acUGUGGCUCUGgcuCCUCGuaCUGU- -5'
18367 5' -55 NC_004681.1 + 27917 0.67 0.772929
Target:  5'- cGGCACgCGGGGCCucGGcGGCAcGGCAc -3'
miRNA:   3'- aCUGUG-GCUCUGGcuCC-UCGUaCUGU- -5'
18367 5' -55 NC_004681.1 + 17743 0.67 0.772929
Target:  5'- -aACACCGAGGUCGccaagggccAGGAGCAgGGCGa -3'
miRNA:   3'- acUGUGGCUCUGGC---------UCCUCGUaCUGU- -5'
18367 5' -55 NC_004681.1 + 59359 0.67 0.762975
Target:  5'- cGGCGCCGAGuaguCCGugGGGGGC-UGGa- -3'
miRNA:   3'- aCUGUGGCUCu---GGC--UCCUCGuACUgu -5'
18367 5' -55 NC_004681.1 + 42835 0.67 0.75289
Target:  5'- cGGCagGCCGcuACCGGGGuAGC-UGACAc -3'
miRNA:   3'- aCUG--UGGCucUGGCUCC-UCGuACUGU- -5'
18367 5' -55 NC_004681.1 + 65183 0.67 0.75289
Target:  5'- gGGCACCGGGGgCGccAGGcAGCggucaGUGGCAu -3'
miRNA:   3'- aCUGUGGCUCUgGC--UCC-UCG-----UACUGU- -5'
18367 5' -55 NC_004681.1 + 40158 0.67 0.742687
Target:  5'- cGACGCCGcAGAUCGAGGcG-AUGAg- -3'
miRNA:   3'- aCUGUGGC-UCUGGCUCCuCgUACUgu -5'
18367 5' -55 NC_004681.1 + 31155 0.67 0.742687
Target:  5'- gGACAUCGAGuCCu-GGGGCG-GGCAg -3'
miRNA:   3'- aCUGUGGCUCuGGcuCCUCGUaCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.