Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18367 | 5' | -55 | NC_004681.1 | + | 57737 | 0.68 | 0.72197 |
Target: 5'- gGGCGCCGAuGCCGGGGAuGCc-GAUg -3' miRNA: 3'- aCUGUGGCUcUGGCUCCU-CGuaCUGu -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 39850 | 0.68 | 0.711476 |
Target: 5'- cGACGCCGAGuu---GGAGC-UGGCAa -3' miRNA: 3'- aCUGUGGCUCuggcuCCUCGuACUGU- -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 16600 | 0.68 | 0.711476 |
Target: 5'- -uGCACCucGACCguuGAGGAGC-UGACGu -3' miRNA: 3'- acUGUGGcuCUGG---CUCCUCGuACUGU- -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 15559 | 0.68 | 0.711476 |
Target: 5'- aGAuCACCGGcACCGAccaGGGCAUGACc -3' miRNA: 3'- aCU-GUGGCUcUGGCUc--CUCGUACUGu -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 55428 | 0.68 | 0.700908 |
Target: 5'- gGACACCGAGAUgaaCGAGGucucaGGCG-GGCc -3' miRNA: 3'- aCUGUGGCUCUG---GCUCC-----UCGUaCUGu -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 19623 | 0.68 | 0.690275 |
Target: 5'- cGACGCCGguccAGGCCaccgacucaAGGGGCAUGAgGa -3' miRNA: 3'- aCUGUGGC----UCUGGc--------UCCUCGUACUgU- -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 45793 | 0.68 | 0.679588 |
Target: 5'- cGAgGCCGAuGGCCGcGGcGGCgAUGACGg -3' miRNA: 3'- aCUgUGGCU-CUGGCuCC-UCG-UACUGU- -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 18743 | 0.68 | 0.679588 |
Target: 5'- cGGCGgCGAGGCCGc---GCGUGACAc -3' miRNA: 3'- aCUGUgGCUCUGGCuccuCGUACUGU- -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 5991 | 0.68 | 0.668858 |
Target: 5'- gGACACUagaGGGACgGAGGuAGCGacagGACAa -3' miRNA: 3'- aCUGUGG---CUCUGgCUCC-UCGUa---CUGU- -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 62267 | 0.7 | 0.604122 |
Target: 5'- -cGCGCCGGGggcaagaucaccGCCGAGGAGUucGACGc -3' miRNA: 3'- acUGUGGCUC------------UGGCUCCUCGuaCUGU- -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 68753 | 0.7 | 0.593361 |
Target: 5'- gUGGCACgCcAGGCCGaAGGAGUuagAUGACGg -3' miRNA: 3'- -ACUGUG-GcUCUGGC-UCCUCG---UACUGU- -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 62451 | 0.7 | 0.593361 |
Target: 5'- gGAaacCCGAauGGCCGAGGGGCAcGACc -3' miRNA: 3'- aCUgu-GGCU--CUGGCUCCUCGUaCUGu -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 5544 | 0.7 | 0.571942 |
Target: 5'- -aGCAUgGAGACacgGAGG-GCAUGACAg -3' miRNA: 3'- acUGUGgCUCUGg--CUCCuCGUACUGU- -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 66655 | 0.7 | 0.5613 |
Target: 5'- gGGCAUCGGGGgguacCCGAGGGGCcgGGu- -3' miRNA: 3'- aCUGUGGCUCU-----GGCUCCUCGuaCUgu -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 66857 | 0.72 | 0.488715 |
Target: 5'- gUGGCGCCGAcagcgaggaGGCCGAGGAGgCgGUGAa- -3' miRNA: 3'- -ACUGUGGCU---------CUGGCUCCUC-G-UACUgu -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 66354 | 0.74 | 0.350664 |
Target: 5'- cGACACgGAGACgGGGGAGCAc---- -3' miRNA: 3'- aCUGUGgCUCUGgCUCCUCGUacugu -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 1050 | 0.75 | 0.326581 |
Target: 5'- gGACGCCGAGAggauguacggcCCGAuGGAGCccUGGCAg -3' miRNA: 3'- aCUGUGGCUCU-----------GGCU-CCUCGu-ACUGU- -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 32559 | 0.75 | 0.326581 |
Target: 5'- cGACGCCcugaagGGGGCCGAGGAGaaGUGACc -3' miRNA: 3'- aCUGUGG------CUCUGGCUCCUCg-UACUGu -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 55667 | 0.75 | 0.318831 |
Target: 5'- cGAuCACCGAGcgcaGCCGGGGcagcguggugAGCAUGACGa -3' miRNA: 3'- aCU-GUGGCUC----UGGCUCC----------UCGUACUGU- -5' |
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18367 | 5' | -55 | NC_004681.1 | + | 30844 | 0.77 | 0.23056 |
Target: 5'- cGACGCCcacGAGGCCGAGGAuGCAgcagGGCu -3' miRNA: 3'- aCUGUGG---CUCUGGCUCCU-CGUa---CUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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