miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18367 5' -55 NC_004681.1 + 5387 1.08 0.001726
Target:  5'- gUGACACCGAGACCGAGGAGCAUGACAc -3'
miRNA:   3'- -ACUGUGGCUCUGGCUCCUCGUACUGU- -5'
18367 5' -55 NC_004681.1 + 62587 0.66 0.811243
Target:  5'- -cGCGCCGAGGCgGAGaAGCAggaGAUg -3'
miRNA:   3'- acUGUGGCUCUGgCUCcUCGUa--CUGu -5'
18367 5' -55 NC_004681.1 + 57183 0.66 0.811243
Target:  5'- cGACACCGAGAgUGcggcuuaacuaGGGGGCG-GAUc -3'
miRNA:   3'- aCUGUGGCUCUgGC-----------UCCUCGUaCUGu -5'
18367 5' -55 NC_004681.1 + 7902 0.66 0.801911
Target:  5'- cGcCuCCGAGgaagccGCCGAGGAGCcgGAa- -3'
miRNA:   3'- aCuGuGGCUC------UGGCUCCUCGuaCUgu -5'
18367 5' -55 NC_004681.1 + 17743 0.67 0.772929
Target:  5'- -aACACCGAGGUCGccaagggccAGGAGCAgGGCGa -3'
miRNA:   3'- acUGUGGCUCUGGC---------UCCUCGUaCUGU- -5'
18367 5' -55 NC_004681.1 + 27917 0.67 0.772929
Target:  5'- cGGCACgCGGGGCCucGGcGGCAcGGCAc -3'
miRNA:   3'- aCUGUG-GCUCUGGcuCC-UCGUaCUGU- -5'
18367 5' -55 NC_004681.1 + 40158 0.67 0.742687
Target:  5'- cGACGCCGcAGAUCGAGGcG-AUGAg- -3'
miRNA:   3'- aCUGUGGC-UCUGGCUCCuCgUACUgu -5'
18367 5' -55 NC_004681.1 + 31155 0.67 0.742687
Target:  5'- gGACAUCGAGuCCu-GGGGCG-GGCAg -3'
miRNA:   3'- aCUGUGGCUCuGGcuCCUCGUaCUGU- -5'
18367 5' -55 NC_004681.1 + 15559 0.68 0.711476
Target:  5'- aGAuCACCGGcACCGAccaGGGCAUGACc -3'
miRNA:   3'- aCU-GUGGCUcUGGCUc--CUCGUACUGu -5'
18367 5' -55 NC_004681.1 + 18743 0.68 0.679588
Target:  5'- cGGCGgCGAGGCCGc---GCGUGACAc -3'
miRNA:   3'- aCUGUgGCUCUGGCuccuCGUACUGU- -5'
18367 5' -55 NC_004681.1 + 32559 0.75 0.326581
Target:  5'- cGACGCCcugaagGGGGCCGAGGAGaaGUGACc -3'
miRNA:   3'- aCUGUGG------CUCUGGCUCCUCg-UACUGu -5'
18367 5' -55 NC_004681.1 + 1050 0.75 0.326581
Target:  5'- gGACGCCGAGAggauguacggcCCGAuGGAGCccUGGCAg -3'
miRNA:   3'- aCUGUGGCUCU-----------GGCU-CCUCGu-ACUGU- -5'
18367 5' -55 NC_004681.1 + 66354 0.74 0.350664
Target:  5'- cGACACgGAGACgGGGGAGCAc---- -3'
miRNA:   3'- aCUGUGgCUCUGgCUCCUCGUacugu -5'
18367 5' -55 NC_004681.1 + 66655 0.7 0.5613
Target:  5'- gGGCAUCGGGGgguacCCGAGGGGCcgGGu- -3'
miRNA:   3'- aCUGUGGCUCU-----GGCUCCUCGuaCUgu -5'
18367 5' -55 NC_004681.1 + 68753 0.7 0.593361
Target:  5'- gUGGCACgCcAGGCCGaAGGAGUuagAUGACGg -3'
miRNA:   3'- -ACUGUG-GcUCUGGC-UCCUCG---UACUGU- -5'
18367 5' -55 NC_004681.1 + 62451 0.7 0.593361
Target:  5'- gGAaacCCGAauGGCCGAGGGGCAcGACc -3'
miRNA:   3'- aCUgu-GGCU--CUGGCUCCUCGUaCUGu -5'
18367 5' -55 NC_004681.1 + 62267 0.7 0.604122
Target:  5'- -cGCGCCGGGggcaagaucaccGCCGAGGAGUucGACGc -3'
miRNA:   3'- acUGUGGCUC------------UGGCUCCUCGuaCUGU- -5'
18367 5' -55 NC_004681.1 + 69381 0.66 0.819487
Target:  5'- cGGCACCGAGGCgGGcGGAGacugguccagagaCGcGACAg -3'
miRNA:   3'- aCUGUGGCUCUGgCU-CCUC-------------GUaCUGU- -5'
18367 5' -55 NC_004681.1 + 55667 0.75 0.318831
Target:  5'- cGAuCACCGAGcgcaGCCGGGGcagcguggugAGCAUGACGa -3'
miRNA:   3'- aCU-GUGGCUC----UGGCUCC----------UCGUACUGU- -5'
18367 5' -55 NC_004681.1 + 66857 0.72 0.488715
Target:  5'- gUGGCGCCGAcagcgaggaGGCCGAGGAGgCgGUGAa- -3'
miRNA:   3'- -ACUGUGGCU---------CUGGCUCCUC-G-UACUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.