miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18368 5' -59.1 NC_004681.1 + 62932 0.66 0.625559
Target:  5'- cUGGUCGGCacgaagCCGGUGUgggugugGUCACCCg- -3'
miRNA:   3'- -ACCAGUUGa-----GGCCACAg------CGGUGGGgc -5'
18368 5' -59.1 NC_004681.1 + 46680 0.66 0.625559
Target:  5'- uUGGUCGuugACguggCCGuugagGUCGCCACgCCUGa -3'
miRNA:   3'- -ACCAGU---UGa---GGCca---CAGCGGUG-GGGC- -5'
18368 5' -59.1 NC_004681.1 + 63679 0.66 0.614091
Target:  5'- aGGUCAGCUCCGuGccGUCGauuuccuUCGCCuuGa -3'
miRNA:   3'- aCCAGUUGAGGC-Ca-CAGC-------GGUGGggC- -5'
18368 5' -59.1 NC_004681.1 + 58556 0.66 0.594329
Target:  5'- gGcGUCGuCUCCGGgauaccCGCCGCCCgCGu -3'
miRNA:   3'- aC-CAGUuGAGGCCaca---GCGGUGGG-GC- -5'
18368 5' -59.1 NC_004681.1 + 44454 0.66 0.594329
Target:  5'- gGGUCuuucCUCCuuucuacccaGUcaGUCGCCACCCCa -3'
miRNA:   3'- aCCAGuu--GAGGc---------CA--CAGCGGUGGGGc -5'
18368 5' -59.1 NC_004681.1 + 36300 0.67 0.583966
Target:  5'- cGGUCGAUcugacgCCGGgaUUGCCAgCCCGc -3'
miRNA:   3'- aCCAGUUGa-----GGCCacAGCGGUgGGGC- -5'
18368 5' -59.1 NC_004681.1 + 3596 0.67 0.583966
Target:  5'- cGGUgAACagUCCGGUGaaaucuacggCGUCGCCCgCGa -3'
miRNA:   3'- aCCAgUUG--AGGCCACa---------GCGGUGGG-GC- -5'
18368 5' -59.1 NC_004681.1 + 72894 0.67 0.573639
Target:  5'- cUGGUgAACUCggcgcgcguggCGGUGcCGUCGCCCa- -3'
miRNA:   3'- -ACCAgUUGAG-----------GCCACaGCGGUGGGgc -5'
18368 5' -59.1 NC_004681.1 + 47670 0.67 0.573639
Target:  5'- cUGcGUCAGugCCGGUGcCGCUGCCgCCGc -3'
miRNA:   3'- -AC-CAGUUgaGGCCACaGCGGUGG-GGC- -5'
18368 5' -59.1 NC_004681.1 + 40387 0.67 0.573639
Target:  5'- cGGcaccgcCAGCguggCCGGUGUCuCCACCCa- -3'
miRNA:   3'- aCCa-----GUUGa---GGCCACAGcGGUGGGgc -5'
18368 5' -59.1 NC_004681.1 + 21413 0.67 0.567463
Target:  5'- cGGUCGacgcaGCUCUGGacgucgcgcuugacGUCGaCCACCUCGa -3'
miRNA:   3'- aCCAGU-----UGAGGCCa-------------CAGC-GGUGGGGC- -5'
18368 5' -59.1 NC_004681.1 + 45673 0.67 0.563356
Target:  5'- aGGUCcACUCCGcGgccgCGCCGCCUg- -3'
miRNA:   3'- aCCAGuUGAGGC-Caca-GCGGUGGGgc -5'
18368 5' -59.1 NC_004681.1 + 30563 0.67 0.563356
Target:  5'- cGGUCAcgggcgggGCgUCCGGUGcUGCCacgagcaccuGCCCCu -3'
miRNA:   3'- aCCAGU--------UG-AGGCCACaGCGG----------UGGGGc -5'
18368 5' -59.1 NC_004681.1 + 16895 0.67 0.553122
Target:  5'- uUGGagCAG-UCgGGUGUCGCCACCgaGg -3'
miRNA:   3'- -ACCa-GUUgAGgCCACAGCGGUGGggC- -5'
18368 5' -59.1 NC_004681.1 + 54285 0.67 0.542944
Target:  5'- aGGUgGAaUUCGGUGagGCCACCgCGc -3'
miRNA:   3'- aCCAgUUgAGGCCACagCGGUGGgGC- -5'
18368 5' -59.1 NC_004681.1 + 42915 0.68 0.522782
Target:  5'- cUGcUCAACUCCGGUGgcggcugcgaaCGCUGCgCCGa -3'
miRNA:   3'- -ACcAGUUGAGGCCACa----------GCGGUGgGGC- -5'
18368 5' -59.1 NC_004681.1 + 64778 0.68 0.522782
Target:  5'- cGGUgGGCauUCCGGUcGUC-UCGCCCCa -3'
miRNA:   3'- aCCAgUUG--AGGCCA-CAGcGGUGGGGc -5'
18368 5' -59.1 NC_004681.1 + 33989 0.68 0.519782
Target:  5'- aGGUCGGCUCCGcGgagaUCgGCCcgcugcagggaaauGCCCCGg -3'
miRNA:   3'- aCCAGUUGAGGC-Cac--AG-CGG--------------UGGGGC- -5'
18368 5' -59.1 NC_004681.1 + 26090 0.68 0.493105
Target:  5'- uUGGUCAGgUCCcau-UUGCCGCCCUGg -3'
miRNA:   3'- -ACCAGUUgAGGccacAGCGGUGGGGC- -5'
18368 5' -59.1 NC_004681.1 + 9324 0.68 0.472798
Target:  5'- cGGUCAACggcggcaagaacaUCUGGggcgucccgguUGUCaCCACCCCGc -3'
miRNA:   3'- aCCAGUUG-------------AGGCC-----------ACAGcGGUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.