miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18368 5' -59.1 NC_004681.1 + 6255 1.09 0.000711
Target:  5'- aUGGUCAACUCCGGUGUCGCCACCCCGa -3'
miRNA:   3'- -ACCAGUUGAGGCCACAGCGGUGGGGC- -5'
18368 5' -59.1 NC_004681.1 + 44454 0.66 0.594329
Target:  5'- gGGUCuuucCUCCuuucuacccaGUcaGUCGCCACCCCa -3'
miRNA:   3'- aCCAGuu--GAGGc---------CA--CAGCGGUGGGGc -5'
18368 5' -59.1 NC_004681.1 + 3596 0.67 0.583966
Target:  5'- cGGUgAACagUCCGGUGaaaucuacggCGUCGCCCgCGa -3'
miRNA:   3'- aCCAgUUG--AGGCCACa---------GCGGUGGG-GC- -5'
18368 5' -59.1 NC_004681.1 + 40387 0.67 0.573639
Target:  5'- cGGcaccgcCAGCguggCCGGUGUCuCCACCCa- -3'
miRNA:   3'- aCCa-----GUUGa---GGCCACAGcGGUGGGgc -5'
18368 5' -59.1 NC_004681.1 + 16895 0.67 0.553122
Target:  5'- uUGGagCAG-UCgGGUGUCGCCACCgaGg -3'
miRNA:   3'- -ACCa-GUUgAGgCCACAGCGGUGGggC- -5'
18368 5' -59.1 NC_004681.1 + 64778 0.68 0.522782
Target:  5'- cGGUgGGCauUCCGGUcGUC-UCGCCCCa -3'
miRNA:   3'- aCCAgUUG--AGGCCA-CAGcGGUGGGGc -5'
18368 5' -59.1 NC_004681.1 + 42915 0.68 0.522782
Target:  5'- cUGcUCAACUCCGGUGgcggcugcgaaCGCUGCgCCGa -3'
miRNA:   3'- -ACcAGUUGAGGCCACa----------GCGGUGgGGC- -5'
18368 5' -59.1 NC_004681.1 + 9324 0.68 0.472798
Target:  5'- cGGUCAACggcggcaagaacaUCUGGggcgucccgguUGUCaCCACCCCGc -3'
miRNA:   3'- aCCAGUUG-------------AGGCC-----------ACAGcGGUGGGGC- -5'
18368 5' -59.1 NC_004681.1 + 32971 0.69 0.463277
Target:  5'- cGG-CAAC-CCguaccgcgcgaagGGUGUCaGCUACCCCGg -3'
miRNA:   3'- aCCaGUUGaGG-------------CCACAG-CGGUGGGGC- -5'
18368 5' -59.1 NC_004681.1 + 37300 0.73 0.251891
Target:  5'- gGGUCAGCUCCaGGaUGg-GCUugCCCGg -3'
miRNA:   3'- aCCAGUUGAGG-CC-ACagCGGugGGGC- -5'
18368 5' -59.1 NC_004681.1 + 56903 0.85 0.038015
Target:  5'- gGGUCAGCUUCGGUGgUGCCgACCCCGa -3'
miRNA:   3'- aCCAGUUGAGGCCACaGCGG-UGGGGC- -5'
18368 5' -59.1 NC_004681.1 + 30563 0.67 0.563356
Target:  5'- cGGUCAcgggcgggGCgUCCGGUGcUGCCacgagcaccuGCCCCu -3'
miRNA:   3'- aCCAGU--------UG-AGGCCACaGCGG----------UGGGGc -5'
18368 5' -59.1 NC_004681.1 + 54285 0.67 0.542944
Target:  5'- aGGUgGAaUUCGGUGagGCCACCgCGc -3'
miRNA:   3'- aCCAgUUgAGGCCACagCGGUGGgGC- -5'
18368 5' -59.1 NC_004681.1 + 33989 0.68 0.519782
Target:  5'- aGGUCGGCUCCGcGgagaUCgGCCcgcugcagggaaauGCCCCGg -3'
miRNA:   3'- aCCAGUUGAGGC-Cac--AG-CGG--------------UGGGGC- -5'
18368 5' -59.1 NC_004681.1 + 26090 0.68 0.493105
Target:  5'- uUGGUCAGgUCCcau-UUGCCGCCCUGg -3'
miRNA:   3'- -ACCAGUUgAGGccacAGCGGUGGGGC- -5'
18368 5' -59.1 NC_004681.1 + 18054 0.69 0.418154
Target:  5'- gUGGUCGcgguCUCCGGUGgcggUGUCGCCUg- -3'
miRNA:   3'- -ACCAGUu---GAGGCCACa---GCGGUGGGgc -5'
18368 5' -59.1 NC_004681.1 + 16815 0.7 0.391881
Target:  5'- gUGGUCaAAUUCgCGGUGggCGCCcucCCCCa -3'
miRNA:   3'- -ACCAG-UUGAG-GCCACa-GCGGu--GGGGc -5'
18368 5' -59.1 NC_004681.1 + 50819 0.71 0.358567
Target:  5'- gGGUgAAgaCC-GUGUCGCCACCCUu -3'
miRNA:   3'- aCCAgUUgaGGcCACAGCGGUGGGGc -5'
18368 5' -59.1 NC_004681.1 + 10882 0.72 0.298073
Target:  5'- gGGUaguagacgucCAGCUCCaGGcgcGUCGCCACCUCGu -3'
miRNA:   3'- aCCA----------GUUGAGG-CCa--CAGCGGUGGGGC- -5'
18368 5' -59.1 NC_004681.1 + 62932 0.66 0.625559
Target:  5'- cUGGUCGGCacgaagCCGGUGUgggugugGUCACCCg- -3'
miRNA:   3'- -ACCAGUUGa-----GGCCACAg------CGGUGGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.