miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18369 5' -52 NC_004681.1 + 43084 0.66 0.922609
Target:  5'- cCGACCGGG-CCG--AACGAGGCgGGGu -3'
miRNA:   3'- -GCUGGUUCaGGCagUUGUUCCGaCUU- -5'
18369 5' -52 NC_004681.1 + 62909 0.66 0.922609
Target:  5'- gGGCCuu-UCCGUUGACAGugcGGCUGGu -3'
miRNA:   3'- gCUGGuucAGGCAGUUGUU---CCGACUu -5'
18369 5' -52 NC_004681.1 + 69251 0.66 0.922609
Target:  5'- uCGGCUggGUCUGUCcGACAccugauGGGCcGAu -3'
miRNA:   3'- -GCUGGuuCAGGCAG-UUGU------UCCGaCUu -5'
18369 5' -52 NC_004681.1 + 6873 0.66 0.910062
Target:  5'- cCGACCGAGUCCcgcucgacGUCGACcacGGCa--- -3'
miRNA:   3'- -GCUGGUUCAGG--------CAGUUGuu-CCGacuu -5'
18369 5' -52 NC_004681.1 + 57059 0.66 0.903369
Target:  5'- cCGACaagAAGUCCGUgGACgAAGGCg--- -3'
miRNA:   3'- -GCUGg--UUCAGGCAgUUG-UUCCGacuu -5'
18369 5' -52 NC_004681.1 + 49634 0.67 0.873876
Target:  5'- gGGCCAGGacguuUCCGUCAGaccCAgcGGGUUGAu -3'
miRNA:   3'- gCUGGUUC-----AGGCAGUU---GU--UCCGACUu -5'
18369 5' -52 NC_004681.1 + 39484 0.67 0.865848
Target:  5'- uGGCuCAAGgCCGguggCAGCGAGGCgGGAc -3'
miRNA:   3'- gCUG-GUUCaGGCa---GUUGUUCCGaCUU- -5'
18369 5' -52 NC_004681.1 + 23603 0.67 0.865848
Target:  5'- cCGGCCAGGUUgGUCAggucggggaugGCGGGGCc--- -3'
miRNA:   3'- -GCUGGUUCAGgCAGU-----------UGUUCCGacuu -5'
18369 5' -52 NC_004681.1 + 12020 0.67 0.857572
Target:  5'- aCGaACCAAGcCCG-CAagggGCAAGGCUGc- -3'
miRNA:   3'- -GC-UGGUUCaGGCaGU----UGUUCCGACuu -5'
18369 5' -52 NC_004681.1 + 38040 0.68 0.83133
Target:  5'- aGGCCGAGggccaUCCGgccuCGGGGCUGAc -3'
miRNA:   3'- gCUGGUUC-----AGGCaguuGUUCCGACUu -5'
18369 5' -52 NC_004681.1 + 69021 0.7 0.742196
Target:  5'- -cGCCGucacGGUCCaUCGACGGGGUUGAGa -3'
miRNA:   3'- gcUGGU----UCAGGcAGUUGUUCCGACUU- -5'
18369 5' -52 NC_004681.1 + 54169 0.71 0.654976
Target:  5'- -cGCCA---CCGUCAACAAGGCUGu- -3'
miRNA:   3'- gcUGGUucaGGCAGUUGUUCCGACuu -5'
18369 5' -52 NC_004681.1 + 33818 0.72 0.58831
Target:  5'- gCGcACgAGGUUggCGUCGACAAGGCUGGc -3'
miRNA:   3'- -GC-UGgUUCAG--GCAGUUGUUCCGACUu -5'
18369 5' -52 NC_004681.1 + 24453 0.73 0.533684
Target:  5'- uGACCGgcuGUCCGgCAACGAGGCgccgGGAg -3'
miRNA:   3'- gCUGGUu--CAGGCaGUUGUUCCGa---CUU- -5'
18369 5' -52 NC_004681.1 + 7693 1.06 0.004312
Target:  5'- uCGACCAAGUCCGUCAACAAGGCUGAAu -3'
miRNA:   3'- -GCUGGUUCAGGCAGUUGUUCCGACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.