miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1837 3' -57.2 NC_001347.2 + 64413 0.66 0.9454
Target:  5'- --gACACCGaUgUCGaGcCGGCGGG-CGg -3'
miRNA:   3'- auaUGUGGC-AgAGC-CuGCCGCCCuGC- -5'
1837 3' -57.2 NC_001347.2 + 229010 0.66 0.9454
Target:  5'- -cUGCuGCCG-CUCGGACGGCcGuACGg -3'
miRNA:   3'- auAUG-UGGCaGAGCCUGCCGcCcUGC- -5'
1837 3' -57.2 NC_001347.2 + 163784 0.66 0.941061
Target:  5'- --aACGCCGcgaUCGaGGCGGCGGcGAUc -3'
miRNA:   3'- auaUGUGGCag-AGC-CUGCCGCC-CUGc -5'
1837 3' -57.2 NC_001347.2 + 92762 0.66 0.936504
Target:  5'- --gGCACCGccUCUUGGGCGGUucuacGGGCc -3'
miRNA:   3'- auaUGUGGC--AGAGCCUGCCGc----CCUGc -5'
1837 3' -57.2 NC_001347.2 + 94040 0.66 0.931729
Target:  5'- gAUGCcCCGcCUaGGugGGCGGaGCGg -3'
miRNA:   3'- aUAUGuGGCaGAgCCugCCGCCcUGC- -5'
1837 3' -57.2 NC_001347.2 + 228560 0.66 0.931729
Target:  5'- -cUGCGCCGg--CGGugGGCcGGcACGa -3'
miRNA:   3'- auAUGUGGCagaGCCugCCGcCC-UGC- -5'
1837 3' -57.2 NC_001347.2 + 95440 0.66 0.923634
Target:  5'- --gGgGCCuguucccuucccggGUCUCGGACgagucgacacgccgGGUGGGACGg -3'
miRNA:   3'- auaUgUGG--------------CAGAGCCUG--------------CCGCCCUGC- -5'
1837 3' -57.2 NC_001347.2 + 149532 0.66 0.921522
Target:  5'- --aACGCCG---CGGGCGGCGuGGAgGg -3'
miRNA:   3'- auaUGUGGCagaGCCUGCCGC-CCUgC- -5'
1837 3' -57.2 NC_001347.2 + 117501 0.66 0.921522
Target:  5'- --gGCGCCGUa--GGACG-CGGGAUa -3'
miRNA:   3'- auaUGUGGCAgagCCUGCcGCCCUGc -5'
1837 3' -57.2 NC_001347.2 + 48102 0.67 0.916089
Target:  5'- gUGUGgGCCGgccCUCGGGguGCGGGugGc -3'
miRNA:   3'- -AUAUgUGGCa--GAGCCUgcCGCCCugC- -5'
1837 3' -57.2 NC_001347.2 + 213316 0.67 0.910439
Target:  5'- --cGCGCCGaaaugCUCaauaacugGGACGGUuGGGACGc -3'
miRNA:   3'- auaUGUGGCa----GAG--------CCUGCCG-CCCUGC- -5'
1837 3' -57.2 NC_001347.2 + 87154 0.67 0.909861
Target:  5'- uUGUGCACCGacuccaugUCUCuGGcCGGCGccagaccGGACGa -3'
miRNA:   3'- -AUAUGUGGC--------AGAG-CCuGCCGC-------CCUGC- -5'
1837 3' -57.2 NC_001347.2 + 162901 0.67 0.904571
Target:  5'- -cUGCACCGUCUCGcccgcgcuGugGGCgcugcuGGGuCGa -3'
miRNA:   3'- auAUGUGGCAGAGC--------CugCCG------CCCuGC- -5'
1837 3' -57.2 NC_001347.2 + 38113 0.68 0.885689
Target:  5'- ---cCGCCGUCUcCGGaugagcggccGCGGCGcGGGCu -3'
miRNA:   3'- auauGUGGCAGA-GCC----------UGCCGC-CCUGc -5'
1837 3' -57.2 NC_001347.2 + 198603 0.68 0.885689
Target:  5'- --cGgGCCGUCgCGGACGaaaGUGGGGCc -3'
miRNA:   3'- auaUgUGGCAGaGCCUGC---CGCCCUGc -5'
1837 3' -57.2 NC_001347.2 + 65713 0.68 0.872067
Target:  5'- -cUGCGCCGcCgauugCGGACcGCaGGGGCGa -3'
miRNA:   3'- auAUGUGGCaGa----GCCUGcCG-CCCUGC- -5'
1837 3' -57.2 NC_001347.2 + 112868 0.68 0.872067
Target:  5'- --aACACCGUCgccaCGGAgucCGGCGGaucGCGg -3'
miRNA:   3'- auaUGUGGCAGa---GCCU---GCCGCCc--UGC- -5'
1837 3' -57.2 NC_001347.2 + 45352 0.68 0.857656
Target:  5'- --cACAgCCGUCugcagcucgUCGGcCGGCGuGGGCGg -3'
miRNA:   3'- auaUGU-GGCAG---------AGCCuGCCGC-CCUGC- -5'
1837 3' -57.2 NC_001347.2 + 19915 0.68 0.857656
Target:  5'- cGUAUcCCGUCUCGcGACGGCaguucGGGugauACGg -3'
miRNA:   3'- aUAUGuGGCAGAGC-CUGCCG-----CCC----UGC- -5'
1837 3' -57.2 NC_001347.2 + 211155 0.68 0.849409
Target:  5'- aAUGCGgCGUCgaauuacCGGGCGGCGauagcagcgacgaGGACGa -3'
miRNA:   3'- aUAUGUgGCAGa------GCCUGCCGC-------------CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.