miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1837 3' -57.2 NC_001347.2 + 94184 0.69 0.842497
Target:  5'- --gGCGCCGggcCUCGGcCGGggaGGGugGg -3'
miRNA:   3'- auaUGUGGCa--GAGCCuGCCg--CCCugC- -5'
1837 3' -57.2 NC_001347.2 + 192274 0.69 0.81846
Target:  5'- --cGCGCgGcCUCGG-CGGCGGG-CGc -3'
miRNA:   3'- auaUGUGgCaGAGCCuGCCGCCCuGC- -5'
1837 3' -57.2 NC_001347.2 + 104290 0.69 0.801647
Target:  5'- --gACGCaaaaGUgCUCGGacucGCGGCGGGugGc -3'
miRNA:   3'- auaUGUGg---CA-GAGCC----UGCCGCCCugC- -5'
1837 3' -57.2 NC_001347.2 + 782 0.7 0.778958
Target:  5'- --cGCACCGgcgguguuuugggugUgUCGGggcGCGGCGGGugGg -3'
miRNA:   3'- auaUGUGGC---------------AgAGCC---UGCCGCCCugC- -5'
1837 3' -57.2 NC_001347.2 + 198697 0.7 0.775391
Target:  5'- --aGCugCGUCgucaaGGACGGCGuguuGGACGc -3'
miRNA:   3'- auaUGugGCAGag---CCUGCCGC----CCUGC- -5'
1837 3' -57.2 NC_001347.2 + 46887 0.7 0.766393
Target:  5'- gAUcCACCGcCUCgaccguggugaaGGGCGGUGGGugGa -3'
miRNA:   3'- aUAuGUGGCaGAG------------CCUGCCGCCCugC- -5'
1837 3' -57.2 NC_001347.2 + 6509 0.7 0.766393
Target:  5'- gGUGgGuuG-UUCGGAaaCGGCGGGACGg -3'
miRNA:   3'- aUAUgUggCaGAGCCU--GCCGCCCUGC- -5'
1837 3' -57.2 NC_001347.2 + 79041 0.7 0.757286
Target:  5'- --aACAUCGUCagGGggcucgaacgaACGGCGGGugGa -3'
miRNA:   3'- auaUGUGGCAGagCC-----------UGCCGCCCugC- -5'
1837 3' -57.2 NC_001347.2 + 94232 0.7 0.757286
Target:  5'- --gGCcCCGgauggugCUCcaGGGCGGUGGGACGg -3'
miRNA:   3'- auaUGuGGCa------GAG--CCUGCCGCCCUGC- -5'
1837 3' -57.2 NC_001347.2 + 94084 0.72 0.681456
Target:  5'- -cUGCGCCGgg--GGGCGGCGGGcACGc -3'
miRNA:   3'- auAUGUGGCagagCCUGCCGCCC-UGC- -5'
1837 3' -57.2 NC_001347.2 + 77908 0.74 0.56432
Target:  5'- --gGCugCGUCgccUGcGACGGCGGGugGa -3'
miRNA:   3'- auaUGugGCAGa--GC-CUGCCGCCCugC- -5'
1837 3' -57.2 NC_001347.2 + 30660 0.75 0.498143
Target:  5'- --gGCGCCGuUCUCGGGCaGCGaGGGCa -3'
miRNA:   3'- auaUGUGGC-AGAGCCUGcCGC-CCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.