miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1837 3' -57.2 NC_001347.2 + 782 0.7 0.778958
Target:  5'- --cGCACCGgcgguguuuugggugUgUCGGggcGCGGCGGGugGg -3'
miRNA:   3'- auaUGUGGC---------------AgAGCC---UGCCGCCCugC- -5'
1837 3' -57.2 NC_001347.2 + 6509 0.7 0.766393
Target:  5'- gGUGgGuuG-UUCGGAaaCGGCGGGACGg -3'
miRNA:   3'- aUAUgUggCaGAGCCU--GCCGCCCUGC- -5'
1837 3' -57.2 NC_001347.2 + 19915 0.68 0.857656
Target:  5'- cGUAUcCCGUCUCGcGACGGCaguucGGGugauACGg -3'
miRNA:   3'- aUAUGuGGCAGAGC-CUGCCG-----CCC----UGC- -5'
1837 3' -57.2 NC_001347.2 + 30660 0.75 0.498143
Target:  5'- --gGCGCCGuUCUCGGGCaGCGaGGGCa -3'
miRNA:   3'- auaUGUGGC-AGAGCCUGcCGC-CCUGc -5'
1837 3' -57.2 NC_001347.2 + 38113 0.68 0.885689
Target:  5'- ---cCGCCGUCUcCGGaugagcggccGCGGCGcGGGCu -3'
miRNA:   3'- auauGUGGCAGA-GCC----------UGCCGC-CCUGc -5'
1837 3' -57.2 NC_001347.2 + 45352 0.68 0.857656
Target:  5'- --cACAgCCGUCugcagcucgUCGGcCGGCGuGGGCGg -3'
miRNA:   3'- auaUGU-GGCAG---------AGCCuGCCGC-CCUGC- -5'
1837 3' -57.2 NC_001347.2 + 46887 0.7 0.766393
Target:  5'- gAUcCACCGcCUCgaccguggugaaGGGCGGUGGGugGa -3'
miRNA:   3'- aUAuGUGGCaGAG------------CCUGCCGCCCugC- -5'
1837 3' -57.2 NC_001347.2 + 48102 0.67 0.916089
Target:  5'- gUGUGgGCCGgccCUCGGGguGCGGGugGc -3'
miRNA:   3'- -AUAUgUGGCa--GAGCCUgcCGCCCugC- -5'
1837 3' -57.2 NC_001347.2 + 64413 0.66 0.9454
Target:  5'- --gACACCGaUgUCGaGcCGGCGGG-CGg -3'
miRNA:   3'- auaUGUGGC-AgAGC-CuGCCGCCCuGC- -5'
1837 3' -57.2 NC_001347.2 + 65713 0.68 0.872067
Target:  5'- -cUGCGCCGcCgauugCGGACcGCaGGGGCGa -3'
miRNA:   3'- auAUGUGGCaGa----GCCUGcCG-CCCUGC- -5'
1837 3' -57.2 NC_001347.2 + 77908 0.74 0.56432
Target:  5'- --gGCugCGUCgccUGcGACGGCGGGugGa -3'
miRNA:   3'- auaUGugGCAGa--GC-CUGCCGCCCugC- -5'
1837 3' -57.2 NC_001347.2 + 79041 0.7 0.757286
Target:  5'- --aACAUCGUCagGGggcucgaacgaACGGCGGGugGa -3'
miRNA:   3'- auaUGUGGCAGagCC-----------UGCCGCCCugC- -5'
1837 3' -57.2 NC_001347.2 + 87154 0.67 0.909861
Target:  5'- uUGUGCACCGacuccaugUCUCuGGcCGGCGccagaccGGACGa -3'
miRNA:   3'- -AUAUGUGGC--------AGAG-CCuGCCGC-------CCUGC- -5'
1837 3' -57.2 NC_001347.2 + 92762 0.66 0.936504
Target:  5'- --gGCACCGccUCUUGGGCGGUucuacGGGCc -3'
miRNA:   3'- auaUGUGGC--AGAGCCUGCCGc----CCUGc -5'
1837 3' -57.2 NC_001347.2 + 94040 0.66 0.931729
Target:  5'- gAUGCcCCGcCUaGGugGGCGGaGCGg -3'
miRNA:   3'- aUAUGuGGCaGAgCCugCCGCCcUGC- -5'
1837 3' -57.2 NC_001347.2 + 94084 0.72 0.681456
Target:  5'- -cUGCGCCGgg--GGGCGGCGGGcACGc -3'
miRNA:   3'- auAUGUGGCagagCCUGCCGCCC-UGC- -5'
1837 3' -57.2 NC_001347.2 + 94184 0.69 0.842497
Target:  5'- --gGCGCCGggcCUCGGcCGGggaGGGugGg -3'
miRNA:   3'- auaUGUGGCa--GAGCCuGCCg--CCCugC- -5'
1837 3' -57.2 NC_001347.2 + 94232 0.7 0.757286
Target:  5'- --gGCcCCGgauggugCUCcaGGGCGGUGGGACGg -3'
miRNA:   3'- auaUGuGGCa------GAG--CCUGCCGCCCUGC- -5'
1837 3' -57.2 NC_001347.2 + 95440 0.66 0.923634
Target:  5'- --gGgGCCuguucccuucccggGUCUCGGACgagucgacacgccgGGUGGGACGg -3'
miRNA:   3'- auaUgUGG--------------CAGAGCCUG--------------CCGCCCUGC- -5'
1837 3' -57.2 NC_001347.2 + 104290 0.69 0.801647
Target:  5'- --gACGCaaaaGUgCUCGGacucGCGGCGGGugGc -3'
miRNA:   3'- auaUGUGg---CA-GAGCC----UGCCGCCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.