miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1837 5' -61.6 NC_001347.2 + 211108 0.66 0.814563
Target:  5'- --aGCGGCCGCcc--CCGGAGAaucgccaaccguauaGGCg -3'
miRNA:   3'- cggCGCCGGCGaguaGGCCUCUg--------------CCG- -5'
1837 5' -61.6 NC_001347.2 + 147969 0.66 0.813756
Target:  5'- cGCUGCGGUuuccaCGCcCAgugCCGGuG-CGGCc -3'
miRNA:   3'- -CGGCGCCG-----GCGaGUa--GGCCuCuGCCG- -5'
1837 5' -61.6 NC_001347.2 + 212595 0.66 0.813756
Target:  5'- -gCGCaGCgCGCuUUAUCCGacucgcugucGAGACGGCu -3'
miRNA:   3'- cgGCGcCG-GCG-AGUAGGC----------CUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 192320 0.66 0.805608
Target:  5'- -gCGCGGCCGCUCccacugcucgcgGUCCaGcucGGGCaGCa -3'
miRNA:   3'- cgGCGCCGGCGAG------------UAGGcC---UCUGcCG- -5'
1837 5' -61.6 NC_001347.2 + 7445 0.66 0.805608
Target:  5'- cGUCGcCGGCCuC-CAggaGGAGAUGGCg -3'
miRNA:   3'- -CGGC-GCCGGcGaGUaggCCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 189118 0.66 0.805608
Target:  5'- cGCCGCGGCgGUggCGaCUGGGccGACaGCg -3'
miRNA:   3'- -CGGCGCCGgCGa-GUaGGCCU--CUGcCG- -5'
1837 5' -61.6 NC_001347.2 + 94278 0.66 0.805608
Target:  5'- cCCcCGGCCGag-GUCCGGAG-CGGg -3'
miRNA:   3'- cGGcGCCGGCgagUAGGCCUCuGCCg -5'
1837 5' -61.6 NC_001347.2 + 214691 0.66 0.805608
Target:  5'- cCCGCGGCUGCaUUGcCUGGuGACGacGCg -3'
miRNA:   3'- cGGCGCCGGCG-AGUaGGCCuCUGC--CG- -5'
1837 5' -61.6 NC_001347.2 + 216141 0.66 0.797325
Target:  5'- uCCGCGG-CGCUUGggagCgGGGuGACGGUg -3'
miRNA:   3'- cGGCGCCgGCGAGUa---GgCCU-CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 66658 0.66 0.797325
Target:  5'- aGCCGCGGCUGC----CCGG-GuCGcGCa -3'
miRNA:   3'- -CGGCGCCGGCGaguaGGCCuCuGC-CG- -5'
1837 5' -61.6 NC_001347.2 + 75227 0.66 0.797325
Target:  5'- uGCCGaGGCUGagCGUCUGGAauucguaauGACGGUa -3'
miRNA:   3'- -CGGCgCCGGCgaGUAGGCCU---------CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 32507 0.66 0.797325
Target:  5'- aGCCGCGuGCUGCUaCGUcaCCGuGuGACgccgGGCa -3'
miRNA:   3'- -CGGCGC-CGGCGA-GUA--GGC-CuCUG----CCG- -5'
1837 5' -61.6 NC_001347.2 + 47872 0.66 0.797325
Target:  5'- gGgCGUGGUgGUUCGUguggaugacgacCUGGcAGACGGCa -3'
miRNA:   3'- -CgGCGCCGgCGAGUA------------GGCC-UCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 155438 0.66 0.792293
Target:  5'- cGCCGCgaaaGGCCGCgcugCAccaccucgggguggaUgCGGuGGCGGUc -3'
miRNA:   3'- -CGGCG----CCGGCGa---GU---------------AgGCCuCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 104747 0.66 0.788914
Target:  5'- gGCCGcCGGCCGCgugugaggCAaacagcccUCCGaGAGAUaGCc -3'
miRNA:   3'- -CGGC-GCCGGCGa-------GU--------AGGC-CUCUGcCG- -5'
1837 5' -61.6 NC_001347.2 + 150958 0.66 0.788914
Target:  5'- aGCUGUGGCUGCaca--CGGAGcACGGg -3'
miRNA:   3'- -CGGCGCCGGCGaguagGCCUC-UGCCg -5'
1837 5' -61.6 NC_001347.2 + 142067 0.66 0.783808
Target:  5'- cGCCGCucacgcuguccgaggGGUCGCUgCcgCCGGuGaagagagcGCGGCg -3'
miRNA:   3'- -CGGCG---------------CCGGCGA-GuaGGCCuC--------UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 103632 0.66 0.780381
Target:  5'- cGCgCGCGGuuGCUCGaguaCCGGcgcguGGUGGCu -3'
miRNA:   3'- -CG-GCGCCggCGAGUa---GGCCu----CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 43236 0.66 0.780381
Target:  5'- aCCGCGGgCGCa-GUCCGGGgcGACGacGCu -3'
miRNA:   3'- cGGCGCCgGCGagUAGGCCU--CUGC--CG- -5'
1837 5' -61.6 NC_001347.2 + 32667 0.66 0.780381
Target:  5'- cGCCGCcgacucGCUGCcgCAgcugCUGGAGcGCGGCc -3'
miRNA:   3'- -CGGCGc-----CGGCGa-GUa---GGCCUC-UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.