miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1837 5' -61.6 NC_001347.2 + 7445 0.66 0.805608
Target:  5'- cGUCGcCGGCCuC-CAggaGGAGAUGGCg -3'
miRNA:   3'- -CGGC-GCCGGcGaGUaggCCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 192320 0.66 0.805608
Target:  5'- -gCGCGGCCGCUCccacugcucgcgGUCCaGcucGGGCaGCa -3'
miRNA:   3'- cgGCGCCGGCGAG------------UAGGcC---UCUGcCG- -5'
1837 5' -61.6 NC_001347.2 + 47872 0.66 0.797325
Target:  5'- gGgCGUGGUgGUUCGUguggaugacgacCUGGcAGACGGCa -3'
miRNA:   3'- -CgGCGCCGgCGAGUA------------GGCC-UCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 32507 0.66 0.797325
Target:  5'- aGCCGCGuGCUGCUaCGUcaCCGuGuGACgccgGGCa -3'
miRNA:   3'- -CGGCGC-CGGCGA-GUA--GGC-CuCUG----CCG- -5'
1837 5' -61.6 NC_001347.2 + 75227 0.66 0.797325
Target:  5'- uGCCGaGGCUGagCGUCUGGAauucguaauGACGGUa -3'
miRNA:   3'- -CGGCgCCGGCgaGUAGGCCU---------CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 66658 0.66 0.797325
Target:  5'- aGCCGCGGCUGC----CCGG-GuCGcGCa -3'
miRNA:   3'- -CGGCGCCGGCGaguaGGCCuCuGC-CG- -5'
1837 5' -61.6 NC_001347.2 + 73628 0.67 0.727036
Target:  5'- gGCCGCcGCCGC-CAcCCau-GGCGGCg -3'
miRNA:   3'- -CGGCGcCGGCGaGUaGGccuCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 76501 0.67 0.717856
Target:  5'- cGCCGCucaGGCCGUgguaguccgagUCGccUCCGGgcgaGGugGGUg -3'
miRNA:   3'- -CGGCG---CCGGCG-----------AGU--AGGCC----UCugCCG- -5'
1837 5' -61.6 NC_001347.2 + 45349 0.67 0.717856
Target:  5'- aGCCGUcuGCaGCUCGUcggCCGGcguGGGCGGCu -3'
miRNA:   3'- -CGGCGc-CGgCGAGUA---GGCC---UCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 40842 0.67 0.717856
Target:  5'- aGUCGCGacGCCGCacgCGUCCGcccgagcgcAGACGGUg -3'
miRNA:   3'- -CGGCGC--CGGCGa--GUAGGCc--------UCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 57576 0.67 0.717856
Target:  5'- cGCUGCGGCUGaag--CCGuacaAGACGGCu -3'
miRNA:   3'- -CGGCGCCGGCgaguaGGCc---UCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 94182 0.67 0.736146
Target:  5'- cGCCG-GGCC--UCggCCGGGGAgGGUg -3'
miRNA:   3'- -CGGCgCCGGcgAGuaGGCCUCUgCCG- -5'
1837 5' -61.6 NC_001347.2 + 228386 0.67 0.736146
Target:  5'- uGCUGCGGCUgGCUgGcgCUGGGcGCGGUg -3'
miRNA:   3'- -CGGCGCCGG-CGAgUa-GGCCUcUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 154878 0.67 0.736146
Target:  5'- aGCgGCGGCCGUggCGg-CGGcaGCGGCg -3'
miRNA:   3'- -CGgCGCCGGCGa-GUagGCCucUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 152906 0.67 0.745178
Target:  5'- cCUGCGGuuGCUgCAcggcuuUCUGGGGACGuGUc -3'
miRNA:   3'- cGGCGCCggCGA-GU------AGGCCUCUGC-CG- -5'
1837 5' -61.6 NC_001347.2 + 19627 0.67 0.754125
Target:  5'- aCUGCGGCCGCUgGaaaaGGAGuaagaAUGGCa -3'
miRNA:   3'- cGGCGCCGGCGAgUagg-CCUC-----UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 208864 0.67 0.762098
Target:  5'- uGCCGCcaccgguGGCCGagcuaugCGagCGGGGACGGg -3'
miRNA:   3'- -CGGCG-------CCGGCga-----GUagGCCUCUGCCg -5'
1837 5' -61.6 NC_001347.2 + 124729 0.67 0.76298
Target:  5'- uGCUGCcGCCGCUCuUCCacGGAccgcuGGCGcGCg -3'
miRNA:   3'- -CGGCGcCGGCGAGuAGG--CCU-----CUGC-CG- -5'
1837 5' -61.6 NC_001347.2 + 141932 0.67 0.76298
Target:  5'- cGCCGCuGGCgGCgcugCCGcGAgacgacgugGACGGCa -3'
miRNA:   3'- -CGGCG-CCGgCGaguaGGC-CU---------CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 153309 0.68 0.708613
Target:  5'- uGCCgGCGcCCGC-CGUgCCGGuGACGaGCa -3'
miRNA:   3'- -CGG-CGCcGGCGaGUA-GGCCuCUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.