miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1837 5' -61.6 NC_001347.2 + 130093 0.88 0.044323
Target:  5'- cGCCGCGGCCucGCcCAgguagCCGGAGACGGCg -3'
miRNA:   3'- -CGGCGCCGG--CGaGUa----GGCCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 70832 0.82 0.122432
Target:  5'- gGCCGCGGCCGCUCGaugacgaugUCGGcgcGGCGGCu -3'
miRNA:   3'- -CGGCGCCGGCGAGUa--------GGCCu--CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 73077 0.8 0.159259
Target:  5'- gGCCGCGGUgCGCUgCAgCCGGAGgaaGCGGCg -3'
miRNA:   3'- -CGGCGCCG-GCGA-GUaGGCCUC---UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 32547 0.79 0.183332
Target:  5'- cGCCGaCGGCCaGgUCAUCCGcGAGuCGGCc -3'
miRNA:   3'- -CGGC-GCCGG-CgAGUAGGC-CUCuGCCG- -5'
1837 5' -61.6 NC_001347.2 + 61304 0.79 0.174969
Target:  5'- aGCCggGCGcGCUGCUCAUCCgcauGGAGACGGg -3'
miRNA:   3'- -CGG--CGC-CGGCGAGUAGG----CCUCUGCCg -5'
1837 5' -61.6 NC_001347.2 + 94093 0.77 0.235858
Target:  5'- uGCCGCGGaCUGCg---CCgGGGGGCGGCg -3'
miRNA:   3'- -CGGCGCC-GGCGaguaGG-CCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 116351 0.76 0.269519
Target:  5'- cCCGCGGCaacaGCaauucggccUCGUCCGGAGACuGGUc -3'
miRNA:   3'- cGGCGCCGg---CG---------AGUAGGCCUCUG-CCG- -5'
1837 5' -61.6 NC_001347.2 + 84726 0.75 0.314223
Target:  5'- cGCCGCGGCCGuCUCGggugucuucagggagCCGGAccGACcuuGGCu -3'
miRNA:   3'- -CGGCGCCGGC-GAGUa--------------GGCCU--CUG---CCG- -5'
1837 5' -61.6 NC_001347.2 + 38094 0.75 0.303029
Target:  5'- gGCCGCGGCgcgggcucggcguccCGC-CGUCC-GAGACGGUg -3'
miRNA:   3'- -CGGCGCCG---------------GCGaGUAGGcCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 33326 0.74 0.355472
Target:  5'- uGUCGCGcGCCGC-CGacgCCcGAGACGGCg -3'
miRNA:   3'- -CGGCGC-CGGCGaGUa--GGcCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 63071 0.74 0.355472
Target:  5'- gGCCGCgccGGCCGCg---CCGcGAGACGGa -3'
miRNA:   3'- -CGGCG---CCGGCGaguaGGC-CUCUGCCg -5'
1837 5' -61.6 NC_001347.2 + 229369 0.74 0.341072
Target:  5'- gGUCGCGGCCGCggggCCGGAG--GGCc -3'
miRNA:   3'- -CGGCGCCGGCGaguaGGCCUCugCCG- -5'
1837 5' -61.6 NC_001347.2 + 188962 0.73 0.390185
Target:  5'- uGCCGCGGCacagGCUUucgcgcacacgauUCCGaGGACGGCg -3'
miRNA:   3'- -CGGCGCCGg---CGAGu------------AGGCcUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 191214 0.73 0.385533
Target:  5'- cGUCGCGcccacGCCGUUCAUCUGGcugcGCGGCg -3'
miRNA:   3'- -CGGCGC-----CGGCGAGUAGGCCuc--UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 167173 0.73 0.409155
Target:  5'- cGCCGCGGCCGCcgCuguggCCGGAGu--GCc -3'
miRNA:   3'- -CGGCGCCGGCGa-Gua---GGCCUCugcCG- -5'
1837 5' -61.6 NC_001347.2 + 22077 0.73 0.393306
Target:  5'- cCCGCcGCUGCUCuUCCucaGAGACGGCc -3'
miRNA:   3'- cGGCGcCGGCGAGuAGGc--CUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 190791 0.73 0.409155
Target:  5'- cCCGCGGCCGCgacCAaggggCgGGGGgcGCGGCg -3'
miRNA:   3'- cGGCGCCGGCGa--GUa----GgCCUC--UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 77054 0.72 0.450459
Target:  5'- aGgCGCGGgCGCgcgUCggCCGGcGACGGCg -3'
miRNA:   3'- -CgGCGCCgGCG---AGuaGGCCuCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 153661 0.72 0.450459
Target:  5'- gGCUGCGGCCGCgg---CGGAGgccgaaGCGGCc -3'
miRNA:   3'- -CGGCGCCGGCGaguagGCCUC------UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 8185 0.72 0.433658
Target:  5'- uGCCGcCGGCCaC-CAaCCGGAGgcACGGCg -3'
miRNA:   3'- -CGGC-GCCGGcGaGUaGGCCUC--UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.