miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1837 5' -61.6 NC_001347.2 + 112842 0.71 0.52095
Target:  5'- aUCGCGGCC-CUCccaaagcgcauGUCCGuAGGCGGCc -3'
miRNA:   3'- cGGCGCCGGcGAG-----------UAGGCcUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 193858 0.71 0.511884
Target:  5'- uGCCGaCGGCgGCgcgGUCCGucGAGAcCGGCg -3'
miRNA:   3'- -CGGC-GCCGgCGag-UAGGC--CUCU-GCCG- -5'
1837 5' -61.6 NC_001347.2 + 46036 0.71 0.511884
Target:  5'- cGCCGuuGCCG-UCGUCguUGGAGACGGa -3'
miRNA:   3'- -CGGCgcCGGCgAGUAG--GCCUCUGCCg -5'
1837 5' -61.6 NC_001347.2 + 213178 0.71 0.52095
Target:  5'- gGCCGCGccauGCCGgUCGUCCGccGuCGGCc -3'
miRNA:   3'- -CGGCGC----CGGCgAGUAGGCcuCuGCCG- -5'
1837 5' -61.6 NC_001347.2 + 95233 0.71 0.511884
Target:  5'- uGCCG-GGCCcaUCGUgUGGGGACGGUg -3'
miRNA:   3'- -CGGCgCCGGcgAGUAgGCCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 151870 0.71 0.485095
Target:  5'- uGCUGCcGCCGC-CAcCCGGcccGGCGGCg -3'
miRNA:   3'- -CGGCGcCGGCGaGUaGGCCu--CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 211936 0.71 0.493952
Target:  5'- cGCUGCGGCCGUgg--CCa-AGACGGCc -3'
miRNA:   3'- -CGGCGCCGGCGaguaGGccUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 156577 0.71 0.52095
Target:  5'- gGCCGgGGuCCGCgggcaccgCcgCCGGAGgcGCGGUu -3'
miRNA:   3'- -CGGCgCC-GGCGa-------GuaGGCCUC--UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 120784 0.7 0.544803
Target:  5'- uCCGCgGGCCGCaaacgcaaaucagCAUCCucGGcGACGGCg -3'
miRNA:   3'- cGGCG-CCGGCGa------------GUAGG--CCuCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 143386 0.7 0.539265
Target:  5'- -gCGCGGCgccaUGCUCGcCCaGGAGACaGGCg -3'
miRNA:   3'- cgGCGCCG----GCGAGUaGG-CCUCUG-CCG- -5'
1837 5' -61.6 NC_001347.2 + 118214 0.7 0.539265
Target:  5'- gGCCGuuGCCGcCUCAgaacCCGacgcgguagcGAGGCGGCa -3'
miRNA:   3'- -CGGCgcCGGC-GAGUa---GGC----------CUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 191895 0.7 0.555002
Target:  5'- cGCCgGCGGCCuccgucuccgugccGCUCG-CCGcuGGCGGCg -3'
miRNA:   3'- -CGG-CGCCGG--------------CGAGUaGGCcuCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 163072 0.7 0.557794
Target:  5'- cGCCGCGGauucCUGCgaAUUCGGAGgaacACGGCa -3'
miRNA:   3'- -CGGCGCC----GGCGagUAGGCCUC----UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 132283 0.7 0.570871
Target:  5'- cGCCGCGucguGCCaacccggcgucggacGCUCcUCCGGAcgaaacgccgcGGCGGCa -3'
miRNA:   3'- -CGGCGC----CGG---------------CGAGuAGGCCU-----------CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 51385 0.7 0.585905
Target:  5'- uGCCGcCGGUCGUggugaaggaugUCGUguacacggCCGGGGAgGGCg -3'
miRNA:   3'- -CGGC-GCCGGCG-----------AGUA--------GGCCUCUgCCG- -5'
1837 5' -61.6 NC_001347.2 + 78053 0.7 0.576499
Target:  5'- uGCCGCGG-CGCUugCAcUUGGAGcCGGCu -3'
miRNA:   3'- -CGGCGCCgGCGA--GUaGGCCUCuGCCG- -5'
1837 5' -61.6 NC_001347.2 + 77980 0.7 0.548505
Target:  5'- aGCgGCGGCgGUggugaCUGGGGACGGUg -3'
miRNA:   3'- -CGgCGCCGgCGagua-GGCCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 140113 0.69 0.593451
Target:  5'- aGCCGCGGCCGCgaaacgcuccagCAcgUCGuGucgacguagaaaAGACGGCg -3'
miRNA:   3'- -CGGCGCCGGCGa-----------GUa-GGC-C------------UCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 167040 0.69 0.59534
Target:  5'- uCCGCGGCCGCUgcgcCcgCCGuGGccaccaACGGCg -3'
miRNA:   3'- cGGCGCCGGCGA----GuaGGCcUC------UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 32204 0.69 0.633255
Target:  5'- cGCgGCGGUCGCga---CGGuGACGGUc -3'
miRNA:   3'- -CGgCGCCGGCGaguagGCCuCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.