miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1837 5' -61.6 NC_001347.2 + 1559 0.69 0.603852
Target:  5'- cGCCGCGGCggauuucCGCg---CgGGGGACGGg -3'
miRNA:   3'- -CGGCGCCG-------GCGaguaGgCCUCUGCCg -5'
1837 5' -61.6 NC_001347.2 + 151133 0.69 0.633255
Target:  5'- cGCCGC-GCCGCUUgAUCacggcagacgaGGAG-CGGCg -3'
miRNA:   3'- -CGGCGcCGGCGAG-UAGg----------CCUCuGCCG- -5'
1837 5' -61.6 NC_001347.2 + 140113 0.69 0.593451
Target:  5'- aGCCGCGGCCGCgaaacgcuccagCAcgUCGuGucgacguagaaaAGACGGCg -3'
miRNA:   3'- -CGGCGCCGGCGa-----------GUa-GGC-C------------UCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 61929 0.68 0.661703
Target:  5'- cGCCGCGgugccGCCGCUCuGUUCGGcuauuACGGUc -3'
miRNA:   3'- -CGGCGC-----CGGCGAG-UAGGCCuc---UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 228331 0.68 0.671154
Target:  5'- cGgCGgGGCCgGCga---CGGGGACGGCg -3'
miRNA:   3'- -CgGCgCCGG-CGaguagGCCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 105262 0.68 0.671154
Target:  5'- aCCgGCGGCUGCUguUgcacgggcUCGGGuGACGGCg -3'
miRNA:   3'- cGG-CGCCGGCGAguA--------GGCCU-CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 131147 0.68 0.661703
Target:  5'- aGCCGCGGCgCGCguacgCCGaGAcccgacGCGGCg -3'
miRNA:   3'- -CGGCGCCG-GCGagua-GGC-CUc-----UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 105184 0.68 0.657917
Target:  5'- aGCCGCuGGUCGaacCUCAUaacgguaggacaGGAGACGGUg -3'
miRNA:   3'- -CGGCG-CCGGC---GAGUAgg----------CCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 192974 0.68 0.661703
Target:  5'- uGUC-UGGCgGCUUAuguuUCUGGGGugGGCg -3'
miRNA:   3'- -CGGcGCCGgCGAGU----AGGCCUCugCCG- -5'
1837 5' -61.6 NC_001347.2 + 145888 0.68 0.652232
Target:  5'- gGCCGCGGCaguCGCUUAgccaccaccUggacgggggggaCCGGGGGCGGg -3'
miRNA:   3'- -CGGCGCCG---GCGAGU---------A------------GGCCUCUGCCg -5'
1837 5' -61.6 NC_001347.2 + 37194 0.68 0.680577
Target:  5'- gGCCGUcgcaagGGCUGCUCGg-CGGccACGGCg -3'
miRNA:   3'- -CGGCG------CCGGCGAGUagGCCucUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 138029 0.68 0.680577
Target:  5'- gGCCGUGGCCGC-CGcCauGAGGCGcGUc -3'
miRNA:   3'- -CGGCGCCGGCGaGUaGgcCUCUGC-CG- -5'
1837 5' -61.6 NC_001347.2 + 119051 0.68 0.708613
Target:  5'- aGCUGCGcGCCGgUCucuuUCCacGGAGcaacgucaugcGCGGCg -3'
miRNA:   3'- -CGGCGC-CGGCgAGu---AGG--CCUC-----------UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 37299 0.68 0.708613
Target:  5'- aGUCGCGGCUGagCGUgUGGAGgACGGg -3'
miRNA:   3'- -CGGCGCCGGCgaGUAgGCCUC-UGCCg -5'
1837 5' -61.6 NC_001347.2 + 94002 0.68 0.70304
Target:  5'- cGCCGCGGCCcaugcccggcacgggGCUCGcgcUCCcuaGGuG-CGGCc -3'
miRNA:   3'- -CGGCGCCGG---------------CGAGU---AGG---CCuCuGCCG- -5'
1837 5' -61.6 NC_001347.2 + 227780 0.68 0.699314
Target:  5'- aGCCGCacgggcaguuGGCUuuuuuGCUaCGUCCGGGucGCGGCg -3'
miRNA:   3'- -CGGCG----------CCGG-----CGA-GUAGGCCUc-UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 228290 0.68 0.699314
Target:  5'- cGCCaGCGGCgaGCggca-CGGAGACGGa -3'
miRNA:   3'- -CGG-CGCCGg-CGaguagGCCUCUGCCg -5'
1837 5' -61.6 NC_001347.2 + 101839 0.68 0.689966
Target:  5'- -gCGUGGCCG-UCAagCGGcgcGACGGCg -3'
miRNA:   3'- cgGCGCCGGCgAGUagGCCu--CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 139426 0.68 0.689966
Target:  5'- aCCGCcGCCGC-CAUCauguugcgCGGAGAcuCGGCc -3'
miRNA:   3'- cGGCGcCGGCGaGUAG--------GCCUCU--GCCG- -5'
1837 5' -61.6 NC_001347.2 + 133898 0.68 0.687153
Target:  5'- gGCgGCGGCCGUgcgcaucgccugccUCAUCCGacaGAG-CGuGCa -3'
miRNA:   3'- -CGgCGCCGGCG--------------AGUAGGC---CUCuGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.