Results 61 - 80 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1837 | 5' | -61.6 | NC_001347.2 | + | 139426 | 0.68 | 0.689966 |
Target: 5'- aCCGCcGCCGC-CAUCauguugcgCGGAGAcuCGGCc -3' miRNA: 3'- cGGCGcCGGCGaGUAG--------GCCUCU--GCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 133898 | 0.68 | 0.687153 |
Target: 5'- gGCgGCGGCCGUgcgcaucgccugccUCAUCCGacaGAG-CGuGCa -3' miRNA: 3'- -CGgCGCCGGCG--------------AGUAGGC---CUCuGC-CG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 101839 | 0.68 | 0.689966 |
Target: 5'- -gCGUGGCCG-UCAagCGGcgcGACGGCg -3' miRNA: 3'- cgGCGCCGGCgAGUagGCCu--CUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 141932 | 0.67 | 0.76298 |
Target: 5'- cGCCGCuGGCgGCgcugCCGcGAgacgacgugGACGGCa -3' miRNA: 3'- -CGGCG-CCGgCGaguaGGC-CU---------CUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 208864 | 0.67 | 0.762098 |
Target: 5'- uGCCGCcaccgguGGCCGagcuaugCGagCGGGGACGGg -3' miRNA: 3'- -CGGCG-------CCGGCga-----GUagGCCUCUGCCg -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 19627 | 0.67 | 0.754125 |
Target: 5'- aCUGCGGCCGCUgGaaaaGGAGuaagaAUGGCa -3' miRNA: 3'- cGGCGCCGGCGAgUagg-CCUC-----UGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 57576 | 0.67 | 0.717856 |
Target: 5'- cGCUGCGGCUGaag--CCGuacaAGACGGCu -3' miRNA: 3'- -CGGCGCCGGCgaguaGGCc---UCUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 124729 | 0.67 | 0.76298 |
Target: 5'- uGCUGCcGCCGCUCuUCCacGGAccgcuGGCGcGCg -3' miRNA: 3'- -CGGCGcCGGCGAGuAGG--CCU-----CUGC-CG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 154878 | 0.67 | 0.736146 |
Target: 5'- aGCgGCGGCCGUggCGg-CGGcaGCGGCg -3' miRNA: 3'- -CGgCGCCGGCGa-GUagGCCucUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 228386 | 0.67 | 0.736146 |
Target: 5'- uGCUGCGGCUgGCUgGcgCUGGGcGCGGUg -3' miRNA: 3'- -CGGCGCCGG-CGAgUa-GGCCUcUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 152906 | 0.67 | 0.745178 |
Target: 5'- cCUGCGGuuGCUgCAcggcuuUCUGGGGACGuGUc -3' miRNA: 3'- cGGCGCCggCGA-GU------AGGCCUCUGC-CG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 40842 | 0.67 | 0.717856 |
Target: 5'- aGUCGCGacGCCGCacgCGUCCGcccgagcgcAGACGGUg -3' miRNA: 3'- -CGGCGC--CGGCGa--GUAGGCc--------UCUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 76501 | 0.67 | 0.717856 |
Target: 5'- cGCCGCucaGGCCGUgguaguccgagUCGccUCCGGgcgaGGugGGUg -3' miRNA: 3'- -CGGCG---CCGGCG-----------AGU--AGGCC----UCugCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 45349 | 0.67 | 0.717856 |
Target: 5'- aGCCGUcuGCaGCUCGUcggCCGGcguGGGCGGCu -3' miRNA: 3'- -CGGCGc-CGgCGAGUA---GGCC---UCUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 73628 | 0.67 | 0.727036 |
Target: 5'- gGCCGCcGCCGC-CAcCCau-GGCGGCg -3' miRNA: 3'- -CGGCGcCGGCGaGUaGGccuCUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 94182 | 0.67 | 0.736146 |
Target: 5'- cGCCG-GGCC--UCggCCGGGGAgGGUg -3' miRNA: 3'- -CGGCgCCGGcgAGuaGGCCUCUgCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 104747 | 0.66 | 0.788914 |
Target: 5'- gGCCGcCGGCCGCgugugaggCAaacagcccUCCGaGAGAUaGCc -3' miRNA: 3'- -CGGC-GCCGGCGa-------GU--------AGGC-CUCUGcCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 216141 | 0.66 | 0.797325 |
Target: 5'- uCCGCGG-CGCUUGggagCgGGGuGACGGUg -3' miRNA: 3'- cGGCGCCgGCGAGUa---GgCCU-CUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 155438 | 0.66 | 0.792293 |
Target: 5'- cGCCGCgaaaGGCCGCgcugCAccaccucgggguggaUgCGGuGGCGGUc -3' miRNA: 3'- -CGGCG----CCGGCGa---GU---------------AgGCCuCUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 7445 | 0.66 | 0.805608 |
Target: 5'- cGUCGcCGGCCuC-CAggaGGAGAUGGCg -3' miRNA: 3'- -CGGC-GCCGGcGaGUaggCCUCUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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