Results 61 - 80 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1837 | 5' | -61.6 | NC_001347.2 | + | 119051 | 0.68 | 0.708613 |
Target: 5'- aGCUGCGcGCCGgUCucuuUCCacGGAGcaacgucaugcGCGGCg -3' miRNA: 3'- -CGGCGC-CGGCgAGu---AGG--CCUC-----------UGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 153309 | 0.68 | 0.708613 |
Target: 5'- uGCCgGCGcCCGC-CGUgCCGGuGACGaGCa -3' miRNA: 3'- -CGG-CGCcGGCGaGUA-GGCCuCUGC-CG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 102050 | 0.68 | 0.712317 |
Target: 5'- cGCCGCGGUCucaccgagguGCUCG-CCuaucaccuguacgguGGcGACGGCg -3' miRNA: 3'- -CGGCGCCGG----------CGAGUaGG---------------CCuCUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 40842 | 0.67 | 0.717856 |
Target: 5'- aGUCGCGacGCCGCacgCGUCCGcccgagcgcAGACGGUg -3' miRNA: 3'- -CGGCGC--CGGCGa--GUAGGCc--------UCUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 57576 | 0.67 | 0.717856 |
Target: 5'- cGCUGCGGCUGaag--CCGuacaAGACGGCu -3' miRNA: 3'- -CGGCGCCGGCgaguaGGCc---UCUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 45349 | 0.67 | 0.717856 |
Target: 5'- aGCCGUcuGCaGCUCGUcggCCGGcguGGGCGGCu -3' miRNA: 3'- -CGGCGc-CGgCGAGUA---GGCC---UCUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 76501 | 0.67 | 0.717856 |
Target: 5'- cGCCGCucaGGCCGUgguaguccgagUCGccUCCGGgcgaGGugGGUg -3' miRNA: 3'- -CGGCG---CCGGCG-----------AGU--AGGCC----UCugCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 73628 | 0.67 | 0.727036 |
Target: 5'- gGCCGCcGCCGC-CAcCCau-GGCGGCg -3' miRNA: 3'- -CGGCGcCGGCGaGUaGGccuCUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 154878 | 0.67 | 0.736146 |
Target: 5'- aGCgGCGGCCGUggCGg-CGGcaGCGGCg -3' miRNA: 3'- -CGgCGCCGGCGa-GUagGCCucUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 228386 | 0.67 | 0.736146 |
Target: 5'- uGCUGCGGCUgGCUgGcgCUGGGcGCGGUg -3' miRNA: 3'- -CGGCGCCGG-CGAgUa-GGCCUcUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 94182 | 0.67 | 0.736146 |
Target: 5'- cGCCG-GGCC--UCggCCGGGGAgGGUg -3' miRNA: 3'- -CGGCgCCGGcgAGuaGGCCUCUgCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 152906 | 0.67 | 0.745178 |
Target: 5'- cCUGCGGuuGCUgCAcggcuuUCUGGGGACGuGUc -3' miRNA: 3'- cGGCGCCggCGA-GU------AGGCCUCUGC-CG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 19627 | 0.67 | 0.754125 |
Target: 5'- aCUGCGGCCGCUgGaaaaGGAGuaagaAUGGCa -3' miRNA: 3'- cGGCGCCGGCGAgUagg-CCUC-----UGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 208864 | 0.67 | 0.762098 |
Target: 5'- uGCCGCcaccgguGGCCGagcuaugCGagCGGGGACGGg -3' miRNA: 3'- -CGGCG-------CCGGCga-----GUagGCCUCUGCCg -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 124729 | 0.67 | 0.76298 |
Target: 5'- uGCUGCcGCCGCUCuUCCacGGAccgcuGGCGcGCg -3' miRNA: 3'- -CGGCGcCGGCGAGuAGG--CCU-----CUGC-CG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 141932 | 0.67 | 0.76298 |
Target: 5'- cGCCGCuGGCgGCgcugCCGcGAgacgacgugGACGGCa -3' miRNA: 3'- -CGGCG-CCGgCGaguaGGC-CU---------CUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 56456 | 0.66 | 0.768244 |
Target: 5'- gGCgGCGGCgGaggaggaGGAGGCGGCg -3' miRNA: 3'- -CGgCGCCGgCgaguaggCCUCUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 158633 | 0.66 | 0.771734 |
Target: 5'- uCCGUGGCCGCgg--CCGG---CGGCc -3' miRNA: 3'- cGGCGCCGGCGaguaGGCCucuGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 38301 | 0.66 | 0.771734 |
Target: 5'- cGCaGCGGCgGCga---CGGAcGGCGGCg -3' miRNA: 3'- -CGgCGCCGgCGaguagGCCU-CUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 21229 | 0.66 | 0.771734 |
Target: 5'- gGuuGCGGUCGCgCA-CCGGcugcAGACagGGCg -3' miRNA: 3'- -CggCGCCGGCGaGUaGGCC----UCUG--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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