miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1837 5' -61.6 NC_001347.2 + 1559 0.69 0.603852
Target:  5'- cGCCGCGGCggauuucCGCg---CgGGGGACGGg -3'
miRNA:   3'- -CGGCGCCG-------GCGaguaGgCCUCUGCCg -5'
1837 5' -61.6 NC_001347.2 + 7445 0.66 0.805608
Target:  5'- cGUCGcCGGCCuC-CAggaGGAGAUGGCg -3'
miRNA:   3'- -CGGC-GCCGGcGaGUaggCCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 8185 0.72 0.433658
Target:  5'- uGCCGcCGGCCaC-CAaCCGGAGgcACGGCg -3'
miRNA:   3'- -CGGC-GCCGGcGaGUaGGCCUC--UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 19627 0.67 0.754125
Target:  5'- aCUGCGGCCGCUgGaaaaGGAGuaagaAUGGCa -3'
miRNA:   3'- cGGCGCCGGCGAgUagg-CCUC-----UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 21229 0.66 0.771734
Target:  5'- gGuuGCGGUCGCgCA-CCGGcugcAGACagGGCg -3'
miRNA:   3'- -CggCGCCGGCGaGUaGGCC----UCUG--CCG- -5'
1837 5' -61.6 NC_001347.2 + 22077 0.73 0.393306
Target:  5'- cCCGCcGCUGCUCuUCCucaGAGACGGCc -3'
miRNA:   3'- cGGCGcCGGCGAGuAGGc--CUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 32204 0.69 0.633255
Target:  5'- cGCgGCGGUCGCga---CGGuGACGGUc -3'
miRNA:   3'- -CGgCGCCGGCGaguagGCCuCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 32507 0.66 0.797325
Target:  5'- aGCCGCGuGCUGCUaCGUcaCCGuGuGACgccgGGCa -3'
miRNA:   3'- -CGGCGC-CGGCGA-GUA--GGC-CuCUG----CCG- -5'
1837 5' -61.6 NC_001347.2 + 32547 0.79 0.183332
Target:  5'- cGCCGaCGGCCaGgUCAUCCGcGAGuCGGCc -3'
miRNA:   3'- -CGGC-GCCGG-CgAGUAGGC-CUCuGCCG- -5'
1837 5' -61.6 NC_001347.2 + 32667 0.66 0.780381
Target:  5'- cGCCGCcgacucGCUGCcgCAgcugCUGGAGcGCGGCc -3'
miRNA:   3'- -CGGCGc-----CGGCGa-GUa---GGCCUC-UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 33326 0.74 0.355472
Target:  5'- uGUCGCGcGCCGC-CGacgCCcGAGACGGCg -3'
miRNA:   3'- -CGGCGC-CGGCGaGUa--GGcCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 37194 0.68 0.680577
Target:  5'- gGCCGUcgcaagGGCUGCUCGg-CGGccACGGCg -3'
miRNA:   3'- -CGGCG------CCGGCGAGUagGCCucUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 37299 0.68 0.708613
Target:  5'- aGUCGCGGCUGagCGUgUGGAGgACGGg -3'
miRNA:   3'- -CGGCGCCGGCgaGUAgGCCUC-UGCCg -5'
1837 5' -61.6 NC_001347.2 + 38094 0.75 0.303029
Target:  5'- gGCCGCGGCgcgggcucggcguccCGC-CGUCC-GAGACGGUg -3'
miRNA:   3'- -CGGCGCCG---------------GCGaGUAGGcCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 38301 0.66 0.771734
Target:  5'- cGCaGCGGCgGCga---CGGAcGGCGGCg -3'
miRNA:   3'- -CGgCGCCGgCGaguagGCCU-CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 40842 0.67 0.717856
Target:  5'- aGUCGCGacGCCGCacgCGUCCGcccgagcgcAGACGGUg -3'
miRNA:   3'- -CGGCGC--CGGCGa--GUAGGCc--------UCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 43236 0.66 0.780381
Target:  5'- aCCGCGGgCGCa-GUCCGGGgcGACGacGCu -3'
miRNA:   3'- cGGCGCCgGCGagUAGGCCU--CUGC--CG- -5'
1837 5' -61.6 NC_001347.2 + 45349 0.67 0.717856
Target:  5'- aGCCGUcuGCaGCUCGUcggCCGGcguGGGCGGCu -3'
miRNA:   3'- -CGGCGc-CGgCGAGUA---GGCC---UCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 46036 0.71 0.511884
Target:  5'- cGCCGuuGCCG-UCGUCguUGGAGACGGa -3'
miRNA:   3'- -CGGCgcCGGCgAGUAG--GCCUCUGCCg -5'
1837 5' -61.6 NC_001347.2 + 47872 0.66 0.797325
Target:  5'- gGgCGUGGUgGUUCGUguggaugacgacCUGGcAGACGGCa -3'
miRNA:   3'- -CgGCGCCGgCGAGUA------------GGCC-UCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.