miRNA display CGI


Results 21 - 40 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1837 5' -61.6 NC_001347.2 + 51385 0.7 0.585905
Target:  5'- uGCCGcCGGUCGUggugaaggaugUCGUguacacggCCGGGGAgGGCg -3'
miRNA:   3'- -CGGC-GCCGGCG-----------AGUA--------GGCCUCUgCCG- -5'
1837 5' -61.6 NC_001347.2 + 56456 0.66 0.768244
Target:  5'- gGCgGCGGCgGaggaggaGGAGGCGGCg -3'
miRNA:   3'- -CGgCGCCGgCgaguaggCCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 57576 0.67 0.717856
Target:  5'- cGCUGCGGCUGaag--CCGuacaAGACGGCu -3'
miRNA:   3'- -CGGCGCCGGCgaguaGGCc---UCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 61304 0.79 0.174969
Target:  5'- aGCCggGCGcGCUGCUCAUCCgcauGGAGACGGg -3'
miRNA:   3'- -CGG--CGC-CGGCGAGUAGG----CCUCUGCCg -5'
1837 5' -61.6 NC_001347.2 + 61929 0.68 0.661703
Target:  5'- cGCCGCGgugccGCCGCUCuGUUCGGcuauuACGGUc -3'
miRNA:   3'- -CGGCGC-----CGGCGAG-UAGGCCuc---UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 63071 0.74 0.355472
Target:  5'- gGCCGCgccGGCCGCg---CCGcGAGACGGa -3'
miRNA:   3'- -CGGCG---CCGGCGaguaGGC-CUCUGCCg -5'
1837 5' -61.6 NC_001347.2 + 64752 0.68 0.690903
Target:  5'- uGCCGUugaagGGCCGCgagagcgcgugcacgGUCCGGccgaaccgcgacuccAGGCGGCg -3'
miRNA:   3'- -CGGCG-----CCGGCGag-------------UAGGCC---------------UCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 66658 0.66 0.797325
Target:  5'- aGCCGCGGCUGC----CCGG-GuCGcGCa -3'
miRNA:   3'- -CGGCGCCGGCGaguaGGCCuCuGC-CG- -5'
1837 5' -61.6 NC_001347.2 + 70832 0.82 0.122432
Target:  5'- gGCCGCGGCCGCUCGaugacgaugUCGGcgcGGCGGCu -3'
miRNA:   3'- -CGGCGCCGGCGAGUa--------GGCCu--CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 73077 0.8 0.159259
Target:  5'- gGCCGCGGUgCGCUgCAgCCGGAGgaaGCGGCg -3'
miRNA:   3'- -CGGCGCCG-GCGA-GUaGGCCUC---UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 73628 0.67 0.727036
Target:  5'- gGCCGCcGCCGC-CAcCCau-GGCGGCg -3'
miRNA:   3'- -CGGCGcCGGCGaGUaGGccuCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 75227 0.66 0.797325
Target:  5'- uGCCGaGGCUGagCGUCUGGAauucguaauGACGGUa -3'
miRNA:   3'- -CGGCgCCGGCgaGUAGGCCU---------CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 76501 0.67 0.717856
Target:  5'- cGCCGCucaGGCCGUgguaguccgagUCGccUCCGGgcgaGGugGGUg -3'
miRNA:   3'- -CGGCG---CCGGCG-----------AGU--AGGCC----UCugCCG- -5'
1837 5' -61.6 NC_001347.2 + 77054 0.72 0.450459
Target:  5'- aGgCGCGGgCGCgcgUCggCCGGcGACGGCg -3'
miRNA:   3'- -CgGCGCCgGCG---AGuaGGCCuCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 77980 0.7 0.548505
Target:  5'- aGCgGCGGCgGUggugaCUGGGGACGGUg -3'
miRNA:   3'- -CGgCGCCGgCGagua-GGCCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 78053 0.7 0.576499
Target:  5'- uGCCGCGG-CGCUugCAcUUGGAGcCGGCu -3'
miRNA:   3'- -CGGCGCCgGCGA--GUaGGCCUCuGCCG- -5'
1837 5' -61.6 NC_001347.2 + 84726 0.75 0.314223
Target:  5'- cGCCGCGGCCGuCUCGggugucuucagggagCCGGAccGACcuuGGCu -3'
miRNA:   3'- -CGGCGCCGGC-GAGUa--------------GGCCU--CUG---CCG- -5'
1837 5' -61.6 NC_001347.2 + 85705 0.69 0.642747
Target:  5'- gGCgGCGGCCggGCUCGU--GGAGGaGGCa -3'
miRNA:   3'- -CGgCGCCGG--CGAGUAggCCUCUgCCG- -5'
1837 5' -61.6 NC_001347.2 + 94002 0.68 0.70304
Target:  5'- cGCCGCGGCCcaugcccggcacgggGCUCGcgcUCCcuaGGuG-CGGCc -3'
miRNA:   3'- -CGGCGCCGG---------------CGAGU---AGG---CCuCuGCCG- -5'
1837 5' -61.6 NC_001347.2 + 94093 0.77 0.235858
Target:  5'- uGCCGCGGaCUGCg---CCgGGGGGCGGCg -3'
miRNA:   3'- -CGGCGCC-GGCGaguaGG-CCUCUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.