miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1837 5' -61.6 NC_001347.2 + 94182 0.67 0.736146
Target:  5'- cGCCG-GGCC--UCggCCGGGGAgGGUg -3'
miRNA:   3'- -CGGCgCCGGcgAGuaGGCCUCUgCCG- -5'
1837 5' -61.6 NC_001347.2 + 94278 0.66 0.805608
Target:  5'- cCCcCGGCCGag-GUCCGGAG-CGGg -3'
miRNA:   3'- cGGcGCCGGCgagUAGGCCUCuGCCg -5'
1837 5' -61.6 NC_001347.2 + 95233 0.71 0.511884
Target:  5'- uGCCG-GGCCcaUCGUgUGGGGACGGUg -3'
miRNA:   3'- -CGGCgCCGGcgAGUAgGCCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 101839 0.68 0.689966
Target:  5'- -gCGUGGCCG-UCAagCGGcgcGACGGCg -3'
miRNA:   3'- cgGCGCCGGCgAGUagGCCu--CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 102050 0.68 0.712317
Target:  5'- cGCCGCGGUCucaccgagguGCUCG-CCuaucaccuguacgguGGcGACGGCg -3'
miRNA:   3'- -CGGCGCCGG----------CGAGUaGG---------------CCuCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 103632 0.66 0.780381
Target:  5'- cGCgCGCGGuuGCUCGaguaCCGGcgcguGGUGGCu -3'
miRNA:   3'- -CG-GCGCCggCGAGUa---GGCCu----CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 104747 0.66 0.788914
Target:  5'- gGCCGcCGGCCGCgugugaggCAaacagcccUCCGaGAGAUaGCc -3'
miRNA:   3'- -CGGC-GCCGGCGa-------GU--------AGGC-CUCUGcCG- -5'
1837 5' -61.6 NC_001347.2 + 105184 0.68 0.657917
Target:  5'- aGCCGCuGGUCGaacCUCAUaacgguaggacaGGAGACGGUg -3'
miRNA:   3'- -CGGCG-CCGGC---GAGUAgg----------CCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 105262 0.68 0.671154
Target:  5'- aCCgGCGGCUGCUguUgcacgggcUCGGGuGACGGCg -3'
miRNA:   3'- cGG-CGCCGGCGAguA--------GGCCU-CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 112842 0.71 0.52095
Target:  5'- aUCGCGGCC-CUCccaaagcgcauGUCCGuAGGCGGCc -3'
miRNA:   3'- cGGCGCCGGcGAG-----------UAGGCcUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 116351 0.76 0.269519
Target:  5'- cCCGCGGCaacaGCaauucggccUCGUCCGGAGACuGGUc -3'
miRNA:   3'- cGGCGCCGg---CG---------AGUAGGCCUCUG-CCG- -5'
1837 5' -61.6 NC_001347.2 + 118214 0.7 0.539265
Target:  5'- gGCCGuuGCCGcCUCAgaacCCGacgcgguagcGAGGCGGCa -3'
miRNA:   3'- -CGGCgcCGGC-GAGUa---GGC----------CUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 119051 0.68 0.708613
Target:  5'- aGCUGCGcGCCGgUCucuuUCCacGGAGcaacgucaugcGCGGCg -3'
miRNA:   3'- -CGGCGC-CGGCgAGu---AGG--CCUC-----------UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 120784 0.7 0.544803
Target:  5'- uCCGCgGGCCGCaaacgcaaaucagCAUCCucGGcGACGGCg -3'
miRNA:   3'- cGGCG-CCGGCGa------------GUAGG--CCuCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 124729 0.67 0.76298
Target:  5'- uGCUGCcGCCGCUCuUCCacGGAccgcuGGCGcGCg -3'
miRNA:   3'- -CGGCGcCGGCGAGuAGG--CCU-----CUGC-CG- -5'
1837 5' -61.6 NC_001347.2 + 129340 0.66 0.771734
Target:  5'- cGCCGCcGCCGCga---UGGAGAacugguCGGCg -3'
miRNA:   3'- -CGGCGcCGGCGaguagGCCUCU------GCCG- -5'
1837 5' -61.6 NC_001347.2 + 130093 0.88 0.044323
Target:  5'- cGCCGCGGCCucGCcCAgguagCCGGAGACGGCg -3'
miRNA:   3'- -CGGCGCCGG--CGaGUa----GGCCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 131147 0.68 0.661703
Target:  5'- aGCCGCGGCgCGCguacgCCGaGAcccgacGCGGCg -3'
miRNA:   3'- -CGGCGCCG-GCGagua-GGC-CUc-----UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 132283 0.7 0.570871
Target:  5'- cGCCGCGucguGCCaacccggcgucggacGCUCcUCCGGAcgaaacgccgcGGCGGCa -3'
miRNA:   3'- -CGGCGC----CGG---------------CGAGuAGGCCU-----------CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 133898 0.68 0.687153
Target:  5'- gGCgGCGGCCGUgcgcaucgccugccUCAUCCGacaGAG-CGuGCa -3'
miRNA:   3'- -CGgCGCCGGCG--------------AGUAGGC---CUCuGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.