miRNA display CGI


Results 81 - 100 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1837 5' -61.6 NC_001347.2 + 167173 0.73 0.409155
Target:  5'- cGCCGCGGCCGCcgCuguggCCGGAGu--GCc -3'
miRNA:   3'- -CGGCGCCGGCGa-Gua---GGCCUCugcCG- -5'
1837 5' -61.6 NC_001347.2 + 188962 0.73 0.390185
Target:  5'- uGCCGCGGCacagGCUUucgcgcacacgauUCCGaGGACGGCg -3'
miRNA:   3'- -CGGCGCCGg---CGAGu------------AGGCcUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 189118 0.66 0.805608
Target:  5'- cGCCGCGGCgGUggCGaCUGGGccGACaGCg -3'
miRNA:   3'- -CGGCGCCGgCGa-GUaGGCCU--CUGcCG- -5'
1837 5' -61.6 NC_001347.2 + 190791 0.73 0.409155
Target:  5'- cCCGCGGCCGCgacCAaggggCgGGGGgcGCGGCg -3'
miRNA:   3'- cGGCGCCGGCGa--GUa----GgCCUC--UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 191214 0.73 0.385533
Target:  5'- cGUCGCGcccacGCCGUUCAUCUGGcugcGCGGCg -3'
miRNA:   3'- -CGGCGC-----CGGCGAGUAGGCCuc--UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 191895 0.7 0.555002
Target:  5'- cGCCgGCGGCCuccgucuccgugccGCUCG-CCGcuGGCGGCg -3'
miRNA:   3'- -CGG-CGCCGG--------------CGAGUaGGCcuCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 192320 0.66 0.805608
Target:  5'- -gCGCGGCCGCUCccacugcucgcgGUCCaGcucGGGCaGCa -3'
miRNA:   3'- cgGCGCCGGCGAG------------UAGGcC---UCUGcCG- -5'
1837 5' -61.6 NC_001347.2 + 192974 0.68 0.661703
Target:  5'- uGUC-UGGCgGCUUAuguuUCUGGGGugGGCg -3'
miRNA:   3'- -CGGcGCCGgCGAGU----AGGCCUCugCCG- -5'
1837 5' -61.6 NC_001347.2 + 193858 0.71 0.511884
Target:  5'- uGCCGaCGGCgGCgcgGUCCGucGAGAcCGGCg -3'
miRNA:   3'- -CGGC-GCCGgCGag-UAGGC--CUCU-GCCG- -5'
1837 5' -61.6 NC_001347.2 + 208864 0.67 0.762098
Target:  5'- uGCCGCcaccgguGGCCGagcuaugCGagCGGGGACGGg -3'
miRNA:   3'- -CGGCG-------CCGGCga-----GUagGCCUCUGCCg -5'
1837 5' -61.6 NC_001347.2 + 211108 0.66 0.814563
Target:  5'- --aGCGGCCGCcc--CCGGAGAaucgccaaccguauaGGCg -3'
miRNA:   3'- cggCGCCGGCGaguaGGCCUCUg--------------CCG- -5'
1837 5' -61.6 NC_001347.2 + 211936 0.71 0.493952
Target:  5'- cGCUGCGGCCGUgg--CCa-AGACGGCc -3'
miRNA:   3'- -CGGCGCCGGCGaguaGGccUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 212595 0.66 0.813756
Target:  5'- -gCGCaGCgCGCuUUAUCCGacucgcugucGAGACGGCu -3'
miRNA:   3'- cgGCGcCG-GCG-AGUAGGC----------CUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 213178 0.71 0.52095
Target:  5'- gGCCGCGccauGCCGgUCGUCCGccGuCGGCc -3'
miRNA:   3'- -CGGCGC----CGGCgAGUAGGCcuCuGCCG- -5'
1837 5' -61.6 NC_001347.2 + 214691 0.66 0.805608
Target:  5'- cCCGCGGCUGCaUUGcCUGGuGACGacGCg -3'
miRNA:   3'- cGGCGCCGGCG-AGUaGGCCuCUGC--CG- -5'
1837 5' -61.6 NC_001347.2 + 214730 0.66 0.780381
Target:  5'- aGCCGagcgcgaGGCCGCUgGUCaucaGGAcGAUacgGGCc -3'
miRNA:   3'- -CGGCg------CCGGCGAgUAGg---CCU-CUG---CCG- -5'
1837 5' -61.6 NC_001347.2 + 216141 0.66 0.797325
Target:  5'- uCCGCGG-CGCUUGggagCgGGGuGACGGUg -3'
miRNA:   3'- cGGCGCCgGCGAGUa---GgCCU-CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 227780 0.68 0.699314
Target:  5'- aGCCGCacgggcaguuGGCUuuuuuGCUaCGUCCGGGucGCGGCg -3'
miRNA:   3'- -CGGCG----------CCGG-----CGA-GUAGGCCUc-UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 228290 0.68 0.699314
Target:  5'- cGCCaGCGGCgaGCggca-CGGAGACGGa -3'
miRNA:   3'- -CGG-CGCCGg-CGaguagGCCUCUGCCg -5'
1837 5' -61.6 NC_001347.2 + 228331 0.68 0.671154
Target:  5'- cGgCGgGGCCgGCga---CGGGGACGGCg -3'
miRNA:   3'- -CgGCgCCGG-CGaguagGCCUCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.