miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1837 5' -61.6 NC_001347.2 + 188962 0.73 0.390185
Target:  5'- uGCCGCGGCacagGCUUucgcgcacacgauUCCGaGGACGGCg -3'
miRNA:   3'- -CGGCGCCGg---CGAGu------------AGGCcUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 167173 0.73 0.409155
Target:  5'- cGCCGCGGCCGCcgCuguggCCGGAGu--GCc -3'
miRNA:   3'- -CGGCGCCGGCGa-Gua---GGCCUCugcCG- -5'
1837 5' -61.6 NC_001347.2 + 167040 0.69 0.59534
Target:  5'- uCCGCGGCCGCUgcgcCcgCCGuGGccaccaACGGCg -3'
miRNA:   3'- cGGCGCCGGCGA----GuaGGCcUC------UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 163072 0.7 0.557794
Target:  5'- cGCCGCGGauucCUGCgaAUUCGGAGgaacACGGCa -3'
miRNA:   3'- -CGGCGCC----GGCGagUAGGCCUC----UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 158633 0.66 0.771734
Target:  5'- uCCGUGGCCGCgg--CCGG---CGGCc -3'
miRNA:   3'- cGGCGCCGGCGaguaGGCCucuGCCG- -5'
1837 5' -61.6 NC_001347.2 + 156577 0.71 0.52095
Target:  5'- gGCCGgGGuCCGCgggcaccgCcgCCGGAGgcGCGGUu -3'
miRNA:   3'- -CGGCgCC-GGCGa-------GuaGGCCUC--UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 155438 0.66 0.792293
Target:  5'- cGCCGCgaaaGGCCGCgcugCAccaccucgggguggaUgCGGuGGCGGUc -3'
miRNA:   3'- -CGGCG----CCGGCGa---GU---------------AgGCCuCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 154878 0.67 0.736146
Target:  5'- aGCgGCGGCCGUggCGg-CGGcaGCGGCg -3'
miRNA:   3'- -CGgCGCCGGCGa-GUagGCCucUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 153661 0.72 0.450459
Target:  5'- gGCUGCGGCCGCgg---CGGAGgccgaaGCGGCc -3'
miRNA:   3'- -CGGCGCCGGCGaguagGCCUC------UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 153309 0.68 0.708613
Target:  5'- uGCCgGCGcCCGC-CGUgCCGGuGACGaGCa -3'
miRNA:   3'- -CGG-CGCcGGCGaGUA-GGCCuCUGC-CG- -5'
1837 5' -61.6 NC_001347.2 + 152906 0.67 0.745178
Target:  5'- cCUGCGGuuGCUgCAcggcuuUCUGGGGACGuGUc -3'
miRNA:   3'- cGGCGCCggCGA-GU------AGGCCUCUGC-CG- -5'
1837 5' -61.6 NC_001347.2 + 151870 0.71 0.485095
Target:  5'- uGCUGCcGCCGC-CAcCCGGcccGGCGGCg -3'
miRNA:   3'- -CGGCGcCGGCGaGUaGGCCu--CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 151133 0.69 0.633255
Target:  5'- cGCCGC-GCCGCUUgAUCacggcagacgaGGAG-CGGCg -3'
miRNA:   3'- -CGGCGcCGGCGAG-UAGg----------CCUCuGCCG- -5'
1837 5' -61.6 NC_001347.2 + 150958 0.66 0.788914
Target:  5'- aGCUGUGGCUGCaca--CGGAGcACGGg -3'
miRNA:   3'- -CGGCGCCGGCGaguagGCCUC-UGCCg -5'
1837 5' -61.6 NC_001347.2 + 147969 0.66 0.813756
Target:  5'- cGCUGCGGUuuccaCGCcCAgugCCGGuG-CGGCc -3'
miRNA:   3'- -CGGCGCCG-----GCGaGUa--GGCCuCuGCCG- -5'
1837 5' -61.6 NC_001347.2 + 145888 0.68 0.652232
Target:  5'- gGCCGCGGCaguCGCUUAgccaccaccUggacgggggggaCCGGGGGCGGg -3'
miRNA:   3'- -CGGCGCCG---GCGAGU---------A------------GGCCUCUGCCg -5'
1837 5' -61.6 NC_001347.2 + 143386 0.7 0.539265
Target:  5'- -gCGCGGCgccaUGCUCGcCCaGGAGACaGGCg -3'
miRNA:   3'- cgGCGCCG----GCGAGUaGG-CCUCUG-CCG- -5'
1837 5' -61.6 NC_001347.2 + 142067 0.66 0.783808
Target:  5'- cGCCGCucacgcuguccgaggGGUCGCUgCcgCCGGuGaagagagcGCGGCg -3'
miRNA:   3'- -CGGCG---------------CCGGCGA-GuaGGCCuC--------UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 141932 0.67 0.76298
Target:  5'- cGCCGCuGGCgGCgcugCCGcGAgacgacgugGACGGCa -3'
miRNA:   3'- -CGGCG-CCGgCGaguaGGC-CU---------CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 140113 0.69 0.593451
Target:  5'- aGCCGCGGCCGCgaaacgcuccagCAcgUCGuGucgacguagaaaAGACGGCg -3'
miRNA:   3'- -CGGCGCCGGCGa-----------GUa-GGC-C------------UCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.