Results 41 - 60 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1837 | 5' | -61.6 | NC_001347.2 | + | 189118 | 0.66 | 0.805608 |
Target: 5'- cGCCGCGGCgGUggCGaCUGGGccGACaGCg -3' miRNA: 3'- -CGGCGCCGgCGa-GUaGGCCU--CUGcCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 94278 | 0.66 | 0.805608 |
Target: 5'- cCCcCGGCCGag-GUCCGGAG-CGGg -3' miRNA: 3'- cGGcGCCGGCgagUAGGCCUCuGCCg -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 212595 | 0.66 | 0.813756 |
Target: 5'- -gCGCaGCgCGCuUUAUCCGacucgcugucGAGACGGCu -3' miRNA: 3'- cgGCGcCG-GCG-AGUAGGC----------CUCUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 214691 | 0.66 | 0.805608 |
Target: 5'- cCCGCGGCUGCaUUGcCUGGuGACGacGCg -3' miRNA: 3'- cGGCGCCGGCG-AGUaGGCCuCUGC--CG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 147969 | 0.66 | 0.813756 |
Target: 5'- cGCUGCGGUuuccaCGCcCAgugCCGGuG-CGGCc -3' miRNA: 3'- -CGGCGCCG-----GCGaGUa--GGCCuCuGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 104747 | 0.66 | 0.788914 |
Target: 5'- gGCCGcCGGCCGCgugugaggCAaacagcccUCCGaGAGAUaGCc -3' miRNA: 3'- -CGGC-GCCGGCGa-------GU--------AGGC-CUCUGcCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 150958 | 0.66 | 0.788914 |
Target: 5'- aGCUGUGGCUGCaca--CGGAGcACGGg -3' miRNA: 3'- -CGGCGCCGGCGaguagGCCUC-UGCCg -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 208864 | 0.67 | 0.762098 |
Target: 5'- uGCCGCcaccgguGGCCGagcuaugCGagCGGGGACGGg -3' miRNA: 3'- -CGGCG-------CCGGCga-----GUagGCCUCUGCCg -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 124729 | 0.67 | 0.76298 |
Target: 5'- uGCUGCcGCCGCUCuUCCacGGAccgcuGGCGcGCg -3' miRNA: 3'- -CGGCGcCGGCGAGuAGG--CCU-----CUGC-CG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 141932 | 0.67 | 0.76298 |
Target: 5'- cGCCGCuGGCgGCgcugCCGcGAgacgacgugGACGGCa -3' miRNA: 3'- -CGGCG-CCGgCGaguaGGC-CU---------CUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 56456 | 0.66 | 0.768244 |
Target: 5'- gGCgGCGGCgGaggaggaGGAGGCGGCg -3' miRNA: 3'- -CGgCGCCGgCgaguaggCCUCUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 158633 | 0.66 | 0.771734 |
Target: 5'- uCCGUGGCCGCgg--CCGG---CGGCc -3' miRNA: 3'- cGGCGCCGGCGaguaGGCCucuGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 38301 | 0.66 | 0.771734 |
Target: 5'- cGCaGCGGCgGCga---CGGAcGGCGGCg -3' miRNA: 3'- -CGgCGCCGgCGaguagGCCU-CUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 21229 | 0.66 | 0.771734 |
Target: 5'- gGuuGCGGUCGCgCA-CCGGcugcAGACagGGCg -3' miRNA: 3'- -CggCGCCGGCGaGUaGGCC----UCUG--CCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 214730 | 0.66 | 0.780381 |
Target: 5'- aGCCGagcgcgaGGCCGCUgGUCaucaGGAcGAUacgGGCc -3' miRNA: 3'- -CGGCg------CCGGCGAgUAGg---CCU-CUG---CCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 129340 | 0.66 | 0.771734 |
Target: 5'- cGCCGCcGCCGCga---UGGAGAacugguCGGCg -3' miRNA: 3'- -CGGCGcCGGCGaguagGCCUCU------GCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 32667 | 0.66 | 0.780381 |
Target: 5'- cGCCGCcgacucGCUGCcgCAgcugCUGGAGcGCGGCc -3' miRNA: 3'- -CGGCGc-----CGGCGa-GUa---GGCCUC-UGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 43236 | 0.66 | 0.780381 |
Target: 5'- aCCGCGGgCGCa-GUCCGGGgcGACGacGCu -3' miRNA: 3'- cGGCGCCgGCGagUAGGCCU--CUGC--CG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 103632 | 0.66 | 0.780381 |
Target: 5'- cGCgCGCGGuuGCUCGaguaCCGGcgcguGGUGGCu -3' miRNA: 3'- -CG-GCGCCggCGAGUa---GGCCu----CUGCCG- -5' |
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1837 | 5' | -61.6 | NC_001347.2 | + | 142067 | 0.66 | 0.783808 |
Target: 5'- cGCCGCucacgcuguccgaggGGUCGCUgCcgCCGGuGaagagagcGCGGCg -3' miRNA: 3'- -CGGCG---------------CCGGCGA-GuaGGCCuC--------UGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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