miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1837 5' -61.6 NC_001347.2 + 32667 0.66 0.780381
Target:  5'- cGCCGCcgacucGCUGCcgCAgcugCUGGAGcGCGGCc -3'
miRNA:   3'- -CGGCGc-----CGGCGa-GUa---GGCCUC-UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 129340 0.66 0.771734
Target:  5'- cGCCGCcGCCGCga---UGGAGAacugguCGGCg -3'
miRNA:   3'- -CGGCGcCGGCGaguagGCCUCU------GCCG- -5'
1837 5' -61.6 NC_001347.2 + 154878 0.67 0.736146
Target:  5'- aGCgGCGGCCGUggCGg-CGGcaGCGGCg -3'
miRNA:   3'- -CGgCGCCGGCGa-GUagGCCucUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 228386 0.67 0.736146
Target:  5'- uGCUGCGGCUgGCUgGcgCUGGGcGCGGUg -3'
miRNA:   3'- -CGGCGCCGG-CGAgUa-GGCCUcUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 94182 0.67 0.736146
Target:  5'- cGCCG-GGCC--UCggCCGGGGAgGGUg -3'
miRNA:   3'- -CGGCgCCGGcgAGuaGGCCUCUgCCG- -5'
1837 5' -61.6 NC_001347.2 + 73628 0.67 0.727036
Target:  5'- gGCCGCcGCCGC-CAcCCau-GGCGGCg -3'
miRNA:   3'- -CGGCGcCGGCGaGUaGGccuCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 76501 0.67 0.717856
Target:  5'- cGCCGCucaGGCCGUgguaguccgagUCGccUCCGGgcgaGGugGGUg -3'
miRNA:   3'- -CGGCG---CCGGCG-----------AGU--AGGCC----UCugCCG- -5'
1837 5' -61.6 NC_001347.2 + 45349 0.67 0.717856
Target:  5'- aGCCGUcuGCaGCUCGUcggCCGGcguGGGCGGCu -3'
miRNA:   3'- -CGGCGc-CGgCGAGUA---GGCC---UCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 40842 0.67 0.717856
Target:  5'- aGUCGCGacGCCGCacgCGUCCGcccgagcgcAGACGGUg -3'
miRNA:   3'- -CGGCGC--CGGCGa--GUAGGCc--------UCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 57576 0.67 0.717856
Target:  5'- cGCUGCGGCUGaag--CCGuacaAGACGGCu -3'
miRNA:   3'- -CGGCGCCGGCgaguaGGCc---UCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 152906 0.67 0.745178
Target:  5'- cCUGCGGuuGCUgCAcggcuuUCUGGGGACGuGUc -3'
miRNA:   3'- cGGCGCCggCGA-GU------AGGCCUCUGC-CG- -5'
1837 5' -61.6 NC_001347.2 + 19627 0.67 0.754125
Target:  5'- aCUGCGGCCGCUgGaaaaGGAGuaagaAUGGCa -3'
miRNA:   3'- cGGCGCCGGCGAgUagg-CCUC-----UGCCG- -5'
1837 5' -61.6 NC_001347.2 + 214730 0.66 0.780381
Target:  5'- aGCCGagcgcgaGGCCGCUgGUCaucaGGAcGAUacgGGCc -3'
miRNA:   3'- -CGGCg------CCGGCGAgUAGg---CCU-CUG---CCG- -5'
1837 5' -61.6 NC_001347.2 + 21229 0.66 0.771734
Target:  5'- gGuuGCGGUCGCgCA-CCGGcugcAGACagGGCg -3'
miRNA:   3'- -CggCGCCGGCGaGUaGGCC----UCUG--CCG- -5'
1837 5' -61.6 NC_001347.2 + 38301 0.66 0.771734
Target:  5'- cGCaGCGGCgGCga---CGGAcGGCGGCg -3'
miRNA:   3'- -CGgCGCCGgCGaguagGCCU-CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 158633 0.66 0.771734
Target:  5'- uCCGUGGCCGCgg--CCGG---CGGCc -3'
miRNA:   3'- cGGCGCCGGCGaguaGGCCucuGCCG- -5'
1837 5' -61.6 NC_001347.2 + 56456 0.66 0.768244
Target:  5'- gGCgGCGGCgGaggaggaGGAGGCGGCg -3'
miRNA:   3'- -CGgCGCCGgCgaguaggCCUCUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 141932 0.67 0.76298
Target:  5'- cGCCGCuGGCgGCgcugCCGcGAgacgacgugGACGGCa -3'
miRNA:   3'- -CGGCG-CCGgCGaguaGGC-CU---------CUGCCG- -5'
1837 5' -61.6 NC_001347.2 + 124729 0.67 0.76298
Target:  5'- uGCUGCcGCCGCUCuUCCacGGAccgcuGGCGcGCg -3'
miRNA:   3'- -CGGCGcCGGCGAGuAGG--CCU-----CUGC-CG- -5'
1837 5' -61.6 NC_001347.2 + 208864 0.67 0.762098
Target:  5'- uGCCGCcaccgguGGCCGagcuaugCGagCGGGGACGGg -3'
miRNA:   3'- -CGGCG-------CCGGCga-----GUagGCCUCUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.