Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18370 | 3' | -55.9 | NC_004681.1 | + | 26269 | 0.66 | 0.792594 |
Target: 5'- uCGUUgGugccucGGGCCUGCCcgCGggGGAa-- -3' miRNA: 3'- -GCAAgU------UCCGGGCGGa-GCuuCCUgac -5' |
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18370 | 3' | -55.9 | NC_004681.1 | + | 39019 | 0.66 | 0.792594 |
Target: 5'- ---cCAcGGCCCGCggCGAcaaagAGGACUGc -3' miRNA: 3'- gcaaGUuCCGGGCGgaGCU-----UCCUGAC- -5' |
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18370 | 3' | -55.9 | NC_004681.1 | + | 3288 | 0.66 | 0.753431 |
Target: 5'- --cUCAAGgagucccgcGCCCGCCUgaaCGGuaAGGACUGc -3' miRNA: 3'- gcaAGUUC---------CGGGCGGA---GCU--UCCUGAC- -5' |
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18370 | 3' | -55.9 | NC_004681.1 | + | 19411 | 0.69 | 0.574053 |
Target: 5'- --cUCGcGGCCCGCCUCcaacAGGugUGc -3' miRNA: 3'- gcaAGUuCCGGGCGGAGcu--UCCugAC- -5' |
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18370 | 3' | -55.9 | NC_004681.1 | + | 6455 | 0.69 | 0.563492 |
Target: 5'- --gUCuccGCCCGCCUCGGugccGGGACUa -3' miRNA: 3'- gcaAGuucCGGGCGGAGCU----UCCUGAc -5' |
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18370 | 3' | -55.9 | NC_004681.1 | + | 11987 | 0.7 | 0.521837 |
Target: 5'- gCGaggCAAGGCCCGCC-CGGauuugaaccgGGGACg- -3' miRNA: 3'- -GCaa-GUUCCGGGCGGaGCU----------UCCUGac -5' |
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18370 | 3' | -55.9 | NC_004681.1 | + | 7768 | 1.08 | 0.001677 |
Target: 5'- gCGUUCAAGGCCCGCCUCGAAGGACUGc -3' miRNA: 3'- -GCAAGUUCCGGGCGGAGCUUCCUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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