miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18370 5' -60 NC_004681.1 + 9173 0.66 0.613966
Target:  5'- aCCCGGCCccucggguaccCCCCGAUgcccaGAGcGCCGuccaGAGCg -3'
miRNA:   3'- -GGGCUGGa----------GGGGCUA-----CUC-CGGC----CUUG- -5'
18370 5' -60 NC_004681.1 + 26279 0.66 0.603669
Target:  5'- cUCgGGCCUgCCCGcgGgggaAGGCCaGGGCg -3'
miRNA:   3'- -GGgCUGGAgGGGCuaC----UCCGGcCUUG- -5'
18370 5' -60 NC_004681.1 + 72854 0.66 0.593393
Target:  5'- aCCGGCUgCCUCGAU--GGCCGcGAAUa -3'
miRNA:   3'- gGGCUGGaGGGGCUAcuCCGGC-CUUG- -5'
18370 5' -60 NC_004681.1 + 10655 0.66 0.583146
Target:  5'- gCCUGGCgC-CCCCGGUGcccgcGGCCGucGCg -3'
miRNA:   3'- -GGGCUG-GaGGGGCUACu----CCGGCcuUG- -5'
18370 5' -60 NC_004681.1 + 10756 0.66 0.581101
Target:  5'- gCCGACCUCggcgaccaCCCGAgcggggaucgugGAGuaCGGGACc -3'
miRNA:   3'- gGGCUGGAG--------GGGCUa-----------CUCcgGCCUUG- -5'
18370 5' -60 NC_004681.1 + 74167 0.66 0.575994
Target:  5'- aCUgGGCCUCCCCGGUacauucacccgggGAGGUCaguuucgucugucagGGAAUu -3'
miRNA:   3'- -GGgCUGGAGGGGCUA-------------CUCCGG---------------CCUUG- -5'
18370 5' -60 NC_004681.1 + 40035 0.66 0.572935
Target:  5'- uCCUGGCCgcgCCCCGcaAUGGaGUCGGAc- -3'
miRNA:   3'- -GGGCUGGa--GGGGC--UACUcCGGCCUug -5'
18370 5' -60 NC_004681.1 + 46852 0.66 0.566828
Target:  5'- cCCCGGCa-CCCCGAUGAucaaccgccuuguccGGgUGGAGu -3'
miRNA:   3'- -GGGCUGgaGGGGCUACU---------------CCgGCCUUg -5'
18370 5' -60 NC_004681.1 + 51294 0.66 0.562766
Target:  5'- aCCGACCUCUacauggCCGGUGAGuccGCCGa--- -3'
miRNA:   3'- gGGCUGGAGG------GGCUACUC---CGGCcuug -5'
18370 5' -60 NC_004681.1 + 68538 0.67 0.53258
Target:  5'- gCCGGugguUCUCCCCGA-GGGGCaGGAc- -3'
miRNA:   3'- gGGCU----GGAGGGGCUaCUCCGgCCUug -5'
18370 5' -60 NC_004681.1 + 44121 0.67 0.53258
Target:  5'- aCCUG-CCUCaCCCcc-GAGGCCGcGGGCc -3'
miRNA:   3'- -GGGCuGGAG-GGGcuaCUCCGGC-CUUG- -5'
18370 5' -60 NC_004681.1 + 44995 0.67 0.522644
Target:  5'- gCCGuCCUCCaCGAUGGGuCCGGGc- -3'
miRNA:   3'- gGGCuGGAGGgGCUACUCcGGCCUug -5'
18370 5' -60 NC_004681.1 + 55596 0.67 0.522644
Target:  5'- gCUGAUCaggUCCuuGAUGAGGuCCuGGAAUg -3'
miRNA:   3'- gGGCUGG---AGGggCUACUCC-GG-CCUUG- -5'
18370 5' -60 NC_004681.1 + 59363 0.67 0.522644
Target:  5'- gCCGAgUagUCCGuggGGGGCUGGAACg -3'
miRNA:   3'- gGGCUgGagGGGCua-CUCCGGCCUUG- -5'
18370 5' -60 NC_004681.1 + 28571 0.67 0.522644
Target:  5'- aCCGGCCUUCaucguugCGAUGuAGGCgCGGAu- -3'
miRNA:   3'- gGGCUGGAGGg------GCUAC-UCCG-GCCUug -5'
18370 5' -60 NC_004681.1 + 49549 0.67 0.502994
Target:  5'- cCCUGGCCUucCCCCGcgGgcAGGCCcGAGg -3'
miRNA:   3'- -GGGCUGGA--GGGGCuaC--UCCGGcCUUg -5'
18370 5' -60 NC_004681.1 + 14476 0.67 0.502994
Target:  5'- gCCG-CCUCCgCCGAgcagggcgcgcUGGuGGCCGGuGCu -3'
miRNA:   3'- gGGCuGGAGG-GGCU-----------ACU-CCGGCCuUG- -5'
18370 5' -60 NC_004681.1 + 1685 0.68 0.455383
Target:  5'- gCCCGA-CUCUUCGAgacgGAGGCauGAGCa -3'
miRNA:   3'- -GGGCUgGAGGGGCUa---CUCCGgcCUUG- -5'
18370 5' -60 NC_004681.1 + 65641 0.68 0.455383
Target:  5'- gCCgGugCUCCacucggagCCGggGAGGCCGGu-- -3'
miRNA:   3'- -GGgCugGAGG--------GGCuaCUCCGGCCuug -5'
18370 5' -60 NC_004681.1 + 64323 0.68 0.449832
Target:  5'- cCCCGACUUCCauccaCGGaagcuggcgaagaagUGAGGcCCGcGGACa -3'
miRNA:   3'- -GGGCUGGAGGg----GCU---------------ACUCC-GGC-CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.