Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18371 | 5' | -55 | NC_004681.1 | + | 42227 | 0.65 | 0.83943 |
Target: 5'- -aGGCUgGCGUGGaccagguuggcaUCGUCAaaguUG-GCCCg -3' miRNA: 3'- gaCCGAgCGCGCC------------AGUAGU----ACuUGGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 63409 | 0.65 | 0.83943 |
Target: 5'- aUGGCUCGacuGCGGUCc---UGAAuuCCCu -3' miRNA: 3'- gACCGAGCg--CGCCAGuaguACUU--GGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 52505 | 0.65 | 0.83943 |
Target: 5'- uUGGCgauaaucucUGCGCGGUUAcUCAUccGACCCu -3' miRNA: 3'- gACCGa--------GCGCGCCAGU-AGUAc-UUGGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 40891 | 0.65 | 0.83943 |
Target: 5'- cCUGcUUCGcCGCGcUCAUCAUGGugacACCCc -3' miRNA: 3'- -GACcGAGC-GCGCcAGUAGUACU----UGGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 2438 | 0.65 | 0.83943 |
Target: 5'- aCUGGCa-GCGCGacgaCAUCGUccGCCCa -3' miRNA: 3'- -GACCGagCGCGCca--GUAGUAcuUGGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 1437 | 0.66 | 0.830745 |
Target: 5'- uUGGCgccgcggGCGgGGUCAUCAaGucCCCc -3' miRNA: 3'- gACCGag-----CGCgCCAGUAGUaCuuGGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 17372 | 0.66 | 0.825438 |
Target: 5'- aCU-GCUCcaGCGCGGUCGaggaccucgucaacaUCAUGGACggCCg -3' miRNA: 3'- -GAcCGAG--CGCGCCAGU---------------AGUACUUG--GG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 8909 | 0.66 | 0.812786 |
Target: 5'- cCUGGCUgGCgGCGGguaccccggCGUCAacGGCCUg -3' miRNA: 3'- -GACCGAgCG-CGCCa--------GUAGUacUUGGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 32236 | 0.66 | 0.803531 |
Target: 5'- -cGGCa-GCGCGGcC-UCGUGucuAGCCCg -3' miRNA: 3'- gaCCGagCGCGCCaGuAGUAC---UUGGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 28696 | 0.66 | 0.803531 |
Target: 5'- -cGuGUUCGCGCuGGUCG-CAUgGGACCg -3' miRNA: 3'- gaC-CGAGCGCG-CCAGUaGUA-CUUGGg -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 69384 | 0.66 | 0.803531 |
Target: 5'- -cGaGCUCGUccacGCGGUCcAUCAgaucGGCCCa -3' miRNA: 3'- gaC-CGAGCG----CGCCAG-UAGUac--UUGGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 37498 | 0.67 | 0.764897 |
Target: 5'- aUGGUg-GCGCGGgCAUCA-GAgcACCCc -3' miRNA: 3'- gACCGagCGCGCCaGUAGUaCU--UGGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 4770 | 0.67 | 0.764897 |
Target: 5'- -aGGCUCGUGUGGcugCGUac--GACCCg -3' miRNA: 3'- gaCCGAGCGCGCCa--GUAguacUUGGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 41939 | 0.67 | 0.754887 |
Target: 5'- -cGGCUC-CGCGGagAUCG---GCCCg -3' miRNA: 3'- gaCCGAGcGCGCCagUAGUacuUGGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 30153 | 0.67 | 0.744758 |
Target: 5'- -gGGCUCaggcgGCGCGGcCGcggaGUGGACCUa -3' miRNA: 3'- gaCCGAG-----CGCGCCaGUag--UACUUGGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 24563 | 0.68 | 0.73452 |
Target: 5'- gUGGCUCgcacuggguGCGCGG-CAUCAUcucGAagauucccuucgACCCg -3' miRNA: 3'- gACCGAG---------CGCGCCaGUAGUA---CU------------UGGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 41844 | 0.68 | 0.712713 |
Target: 5'- -aGGUUCccguCGCGGUCGuagaugucgguggUCAUGAugCCc -3' miRNA: 3'- gaCCGAGc---GCGCCAGU-------------AGUACUugGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 35121 | 0.68 | 0.70326 |
Target: 5'- uCUGGUauaUGCGCGGUCAcCAcaacuugcUGAGCUCc -3' miRNA: 3'- -GACCGa--GCGCGCCAGUaGU--------ACUUGGG- -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 15884 | 0.69 | 0.671403 |
Target: 5'- cCUGGCggcCGCGUgGGUCAcCGUGAagaucGCCg -3' miRNA: 3'- -GACCGa--GCGCG-CCAGUaGUACU-----UGGg -5' |
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18371 | 5' | -55 | NC_004681.1 | + | 38894 | 0.69 | 0.6607 |
Target: 5'- -cGGCggacuugCGCGCGGcccgCAguucCAUGAGCCa -3' miRNA: 3'- gaCCGa------GCGCGCCa---GUa---GUACUUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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