miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18371 5' -55 NC_004681.1 + 8372 1.12 0.000972
Target:  5'- uCUGGCUCGCGCGGUCAUCAUGAACCCg -3'
miRNA:   3'- -GACCGAGCGCGCCAGUAGUACUUGGG- -5'
18371 5' -55 NC_004681.1 + 63409 0.65 0.83943
Target:  5'- aUGGCUCGacuGCGGUCc---UGAAuuCCCu -3'
miRNA:   3'- gACCGAGCg--CGCCAGuaguACUU--GGG- -5'
18371 5' -55 NC_004681.1 + 40891 0.65 0.83943
Target:  5'- cCUGcUUCGcCGCGcUCAUCAUGGugacACCCc -3'
miRNA:   3'- -GACcGAGC-GCGCcAGUAGUACU----UGGG- -5'
18371 5' -55 NC_004681.1 + 2438 0.65 0.83943
Target:  5'- aCUGGCa-GCGCGacgaCAUCGUccGCCCa -3'
miRNA:   3'- -GACCGagCGCGCca--GUAGUAcuUGGG- -5'
18371 5' -55 NC_004681.1 + 1437 0.66 0.830745
Target:  5'- uUGGCgccgcggGCGgGGUCAUCAaGucCCCc -3'
miRNA:   3'- gACCGag-----CGCgCCAGUAGUaCuuGGG- -5'
18371 5' -55 NC_004681.1 + 17372 0.66 0.825438
Target:  5'- aCU-GCUCcaGCGCGGUCGaggaccucgucaacaUCAUGGACggCCg -3'
miRNA:   3'- -GAcCGAG--CGCGCCAGU---------------AGUACUUG--GG- -5'
18371 5' -55 NC_004681.1 + 8909 0.66 0.812786
Target:  5'- cCUGGCUgGCgGCGGguaccccggCGUCAacGGCCUg -3'
miRNA:   3'- -GACCGAgCG-CGCCa--------GUAGUacUUGGG- -5'
18371 5' -55 NC_004681.1 + 32236 0.66 0.803531
Target:  5'- -cGGCa-GCGCGGcC-UCGUGucuAGCCCg -3'
miRNA:   3'- gaCCGagCGCGCCaGuAGUAC---UUGGG- -5'
18371 5' -55 NC_004681.1 + 28696 0.66 0.803531
Target:  5'- -cGuGUUCGCGCuGGUCG-CAUgGGACCg -3'
miRNA:   3'- gaC-CGAGCGCG-CCAGUaGUA-CUUGGg -5'
18371 5' -55 NC_004681.1 + 37498 0.67 0.764897
Target:  5'- aUGGUg-GCGCGGgCAUCA-GAgcACCCc -3'
miRNA:   3'- gACCGagCGCGCCaGUAGUaCU--UGGG- -5'
18371 5' -55 NC_004681.1 + 57454 0.74 0.362252
Target:  5'- uCUGGCguuagCGCGCGGUCccug-GAGCUCa -3'
miRNA:   3'- -GACCGa----GCGCGCCAGuaguaCUUGGG- -5'
18371 5' -55 NC_004681.1 + 56437 0.7 0.585597
Target:  5'- -gGGC-CGCGaGGUCAUCGUc-ACCCa -3'
miRNA:   3'- gaCCGaGCGCgCCAGUAGUAcuUGGG- -5'
18371 5' -55 NC_004681.1 + 2147 0.69 0.6607
Target:  5'- -cGGCaggUUGCGCGG-CGUgGUGAugauCCCa -3'
miRNA:   3'- gaCCG---AGCGCGCCaGUAgUACUu---GGG- -5'
18371 5' -55 NC_004681.1 + 15884 0.69 0.671403
Target:  5'- cCUGGCggcCGCGUgGGUCAcCGUGAagaucGCCg -3'
miRNA:   3'- -GACCGa--GCGCG-CCAGUaGUACU-----UGGg -5'
18371 5' -55 NC_004681.1 + 24563 0.68 0.73452
Target:  5'- gUGGCUCgcacuggguGCGCGG-CAUCAUcucGAagauucccuucgACCCg -3'
miRNA:   3'- gACCGAG---------CGCGCCaGUAGUA---CU------------UGGG- -5'
18371 5' -55 NC_004681.1 + 30153 0.67 0.744758
Target:  5'- -gGGCUCaggcgGCGCGGcCGcggaGUGGACCUa -3'
miRNA:   3'- gaCCGAG-----CGCGCCaGUag--UACUUGGG- -5'
18371 5' -55 NC_004681.1 + 4770 0.67 0.764897
Target:  5'- -aGGCUCGUGUGGcugCGUac--GACCCg -3'
miRNA:   3'- gaCCGAGCGCGCCa--GUAguacUUGGG- -5'
18371 5' -55 NC_004681.1 + 42227 0.65 0.83943
Target:  5'- -aGGCUgGCGUGGaccagguuggcaUCGUCAaaguUG-GCCCg -3'
miRNA:   3'- gaCCGAgCGCGCC------------AGUAGU----ACuUGGG- -5'
18371 5' -55 NC_004681.1 + 1318 0.72 0.462244
Target:  5'- -cGGCUCGuCGCGGU--UCAUGuACCg -3'
miRNA:   3'- gaCCGAGC-GCGCCAguAGUACuUGGg -5'
18371 5' -55 NC_004681.1 + 28695 0.72 0.472046
Target:  5'- gCUGGCUUagGCuuGGUCGUCAccacugGGACCCc -3'
miRNA:   3'- -GACCGAG--CGcgCCAGUAGUa-----CUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.